PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01994.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ZF-HD

Protein Properties

Length: 359aa MW: 38263.9 Da PI: 10.2467

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01994.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	94.6	8.5e-30	291	347	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + v+Y+eC++NhAas+GghavDGC+Efm+ g++gta+a+ CaAC CHR+FHRreve Zmw_sc01994.1.g00160.1.am.mk 291 KVVHYRECQRNHAASIGGHAVDGCREFMAL-GADGTADAFVCAACSCHRSFHRREVEA 347 5799***********************9.999*******************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02704	2.8E-10	69	105	IPR003854	Gibberellin regulated protein
ProDom	PD125774	1.0E-17	289	346	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.0E-27	293	345	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.3E-24	294	345	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.468	295	344	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MAKLLALLLL CSLFLAAAAA AVMASAAEIA PCPGVEEGND DLHRRRSIAP SPGNHKGRKD 60 GKGNLKPSQC SGECHRRCSK THHRKPCLFF CNKCCTKCLC VPPGSPLAAA GRLDANQKSK 120 RSLGKMADTP GRLVPSLRAP PVTVLRIDRL SLRAFMERSG AGKRTEKKSR TARTPTKFAV 180 LQPGTTLAGK KLLDAFNRTP HLEGAGQASQ FIIMQNHTNN WWGTFASSNG AQPGRAFSSS 240 FLPVSPHQLP FLLVLEAPQS PPPTTTTTAA TMGPKQDPPT ANGTATRKET KVVHYRECQR 300 NHAASIGGHA VDGCREFMAL GADGTADAFV CAACSCHRSF HRREVEAAEC SSTTTTTSG

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MAKLLALLLL CSLFLAAAAA AVMASAAEIA PCPGVEEGND DLHRRRSIAP SPGNHKGRKD  60
GKGNLKPSQC SGECHRRCSK THHRKPCLFF CNKCCTKCLC VPPGSPLAAA GRLDANQKSK  120
RSLGKMADTP GRLVPSLRAP PVTVLRIDRL SLRAFMERSG AGKRTEKKSR TARTPTKFAV  180
LQPGTTLAGK KLLDAFNRTP HLEGAGQASQ FIIMQNHTNN WWGTFASSNG AQPGRAFSSS  240
FLPVSPHQLP FLLVLEAPQS PPPTTTTTAA TMGPKQDPPT ANGTATRKET KVVHYRECQR  300
NHAASIGGHA VDGCREFMAL GADGTADAFV CAACSCHRSF HRREVEAAEC SSTTTTTSG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120