PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01992.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 232aa    MW: 24732.3 Da    PI: 10.761
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01992.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.43.8e-284592148
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                                  k+ien +nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+l +
  Zmw_sc01992.1.g00030.1.am.mk 45 KPIENATNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLTT 92
                                  78*******************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.0443797IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-333796IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-283959IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-253997IPR002100Transcription factor, MADS-box
CDDcd002652.25E-3339146No hitNo description
PfamPF003196.1E-254792IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-285974IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-287495IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MLNMMSQTDL SCCPSKVKEQ PAPANSGPSS GSTKPGIIRG RIEIKPIENA TNRQVTFCKR  60
RNGLLKKAYE LSVLCDAEVA LVVFSSRGRL TTAAEEKRGA CIASGDDTSK ESWCLGGNAK  120
SREAPLHVGV KATIERYKKA NSDSSNTGTV AEVNAQTTRI IRLAVKQSKS RRGCWAKRCG  180
AVDRPAAAQP GMTSLWAGAS KWTGCSATTG QISRRKKATG QAASTFLLNR PA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n6j_A4e-153994257Myocyte-specific enhancer factor 2B
1n6j_B4e-153994257Myocyte-specific enhancer factor 2B
1tqe_P3e-153994358Myocyte-specific enhancer factor 2B
1tqe_Q3e-153994358Myocyte-specific enhancer factor 2B
1tqe_R3e-153994358Myocyte-specific enhancer factor 2B
1tqe_S3e-153994358Myocyte-specific enhancer factor 2B
6c9l_A3e-153994358Myocyte-specific enhancer factor 2B
6c9l_B3e-153994358Myocyte-specific enhancer factor 2B
6c9l_C3e-153994358Myocyte-specific enhancer factor 2B
6c9l_D3e-153994358Myocyte-specific enhancer factor 2B
6c9l_E3e-153994358Myocyte-specific enhancer factor 2B
6c9l_F3e-153994358Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816640.13e-50MADS-box transcription factor 3 isoform X3
SwissprotQ407048e-39MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBLA0A0A9TLG63e-55A0A0A9TLG6_ARUDO; Uncharacterized protein
STRINGPavir.Ea00226.1.p3e-49(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3471634
Publications ? help Back to Top
  1. Kyozuka J,Shimamoto K
    Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants.
    Plant Cell Physiol., 2002. 43(1): p. 130-5
    [PMID:11828031]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]