PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01986.1.g00190.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 837aa MW: 92805.6 Da PI: 7.0662

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01986.1.g00190.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.5	6e-19	265	364	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLk 75 f+kvl+ sd+++ grlvlpk +ae++ ++++e++ lt++d +g++W +++++ +++s++yvl+ G ++ +L+ Zmw_sc01986.1.g00190.1.sm.mkhc 265 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDARGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQ 342 99************************555567778***********99899999999.********* PP TT-EEEEEE-SSSEE..EEEEE- CS B3 76 egDfvvFkldgrsefelvvkvfr 98 +gD+v+F++++ +++lv+++++ Zmw_sc01986.1.g00190.1.sm.mkhc 343 AGDTVTFSRIE-PGGKLVMGFRK 364 ******887.77777877776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.4E-31	257	374	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.09E-21	262	365	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.90E-24	263	364	No hit	No description
PROSITE profile	PS50863	11.589	265	366	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.1E-16	265	364	IPR003340	B3 DNA binding domain
SMART	SM01019	1.5E-22	265	365	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	15.116	526	576	IPR011124	Zinc finger, CW-type
Pfam	PF07496	5.2E-12	531	573	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010030	Biological Process	positive regulation of seed germination
GO:2000034	Biological Process	regulation of seed maturation
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 837 aa Download sequence Send to blast
MIYLMAEEFN GSGQVVPKLF PSQSNLQIFG KSEELLPGRK FVQSPPITVD SINDDITIIS 60 KNNRPFIVRN IEVGQSSSIL RQKEIENGSR QIKWEPATLN IGDMGRMPFL TRTQSALESP 120 HGVQRDDSKD PITESTTNRS LSEARLSMTL GIANNGSKME ATSPVDRHML SPTTAIAEGR 180 ELTTSLLSPF QNAQRARHFL TRPPRVSEDA AFDPTKDVFS HLRVARPPTE GRGRNQLLPR 240 YWPRITDQEL QQISGDSNST IVPLFEKVLS ASDAGRIGRL VLPKACAEAY FPPISQPEGR 300 PLTIQDARGK EWHFQFRFWP NNNSRMYVLE GVTPCIQSLQ LQAGDTVTFS RIEPGGKLVM 360 GFRKATNSVS LPDSQISAIA NGSLLSETLF SSANENLPVV SGYPGFLQSI KGAADLHPSS 420 LYDHHVHSAD GDVSWPKTDK LGSRLDEGSL PFLQKKSRNI GSKSRRFLMD AEDALELKLT 480 WEEAQELLRP APTSKPTFVT IEDYEFEEYD EPPVFAKRSI FTIRATGEQD QWIQCDDCSK 540 WRRLPLNVIV ASKWTCTDNS WDPKSCSCSA PEELTTKELQ SVLQQYEEMR RRKGISYGMK 600 LNVAEMDGTS LDALATATVY GEIGNQGSTS VATTTKHPRH RPGCTCIVCI QPPSGKGPKH 660 SPSCTCNVCM TVKRRFKTLM MRKKQRQSER DEAEASKKIQ WASRDETEGS SLTRSPQTLD 720 TTRDSDVTMS DKQAADMSKG HIDLNFHPAV REDQEQHGSQ PRPASMMGLL EVATRPLDNY 780 MKQNGLTSLG GGEQGGSPST ATVPPAPVES EERASNENLL LSLVQLHRTA GAAELTR

Sequence ? help Back to Top

Protein Sequence Length: 837 aa Download sequence Send to blast

MIYLMAEEFN GSGQVVPKLF PSQSNLQIFG KSEELLPGRK FVQSPPITVD SINDDITIIS  60
KNNRPFIVRN IEVGQSSSIL RQKEIENGSR QIKWEPATLN IGDMGRMPFL TRTQSALESP  120
HGVQRDDSKD PITESTTNRS LSEARLSMTL GIANNGSKME ATSPVDRHML SPTTAIAEGR  180
ELTTSLLSPF QNAQRARHFL TRPPRVSEDA AFDPTKDVFS HLRVARPPTE GRGRNQLLPR  240
YWPRITDQEL QQISGDSNST IVPLFEKVLS ASDAGRIGRL VLPKACAEAY FPPISQPEGR  300
PLTIQDARGK EWHFQFRFWP NNNSRMYVLE GVTPCIQSLQ LQAGDTVTFS RIEPGGKLVM  360
GFRKATNSVS LPDSQISAIA NGSLLSETLF SSANENLPVV SGYPGFLQSI KGAADLHPSS  420
LYDHHVHSAD GDVSWPKTDK LGSRLDEGSL PFLQKKSRNI GSKSRRFLMD AEDALELKLT  480
WEEAQELLRP APTSKPTFVT IEDYEFEEYD EPPVFAKRSI FTIRATGEQD QWIQCDDCSK  540
WRRLPLNVIV ASKWTCTDNS WDPKSCSCSA PEELTTKELQ SVLQQYEEMR RRKGISYGMK  600
LNVAEMDGTS LDALATATVY GEIGNQGSTS VATTTKHPRH RPGCTCIVCI QPPSGKGPKH  660
SPSCTCNVCM TVKRRFKTLM MRKKQRQSER DEAEASKKIQ WASRDETEGS SLTRSPQTLD  720
TTRDSDVTMS DKQAADMSKG HIDLNFHPAV REDQEQHGSQ PRPASMMGLL EVATRPLDNY  780
MKQNGLTSLG GGEQGGSPST ATVPPAPVES EERASNENLL LSLVQLHRTA GAAELTR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	3e-68	243	368	2	127	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	672	683	KRRFKTLMMRKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958699.1	0.0	B3 domain-containing protein Os07g0679700
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	K3ZQF4	0.0	K3ZQF4_SETIT; Uncharacterized protein
STRING	Pavir.Ba00225.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6519	37	48

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]