 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zmw_sc01983.1.g00170.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
| Family | NF-YB | ||||||||
| Protein Properties | Length: 1106aa MW: 119493 Da PI: 8.618 | ||||||||
| Description | NF-YB family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YB | 140.7 | 3.8e-44 | 93 | 184 | 3 | 94 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvepl 83
++d++lPianv+rimk vlP +akisk aket+qec++efi+fvt+eas++c+re+rktingdd+++a+ +lG+++y++++
Zmw_sc01983.1.g00170.1.am.mk 93 AHDNLLPIANVGRIMKDVLPPQAKISKRAKETIQECATEFIGFVTGEASERCRRERRKTINGDDICHAMRSLGLDNYADTM 173
6899***************************************************************************** PP
NF-YB 84 kvylkkyrele 94
+ yl++yre e
Zmw_sc01983.1.g00170.1.am.mk 174 RRYLQRYRESE 184
*********87 PP
| |||||||
| 2 | zf-C2H2 | 15.1 | 6.5e-05 | 434 | 456 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C+k F r nL+ H r H
Zmw_sc01983.1.g00170.1.am.mk 434 FVCEICHKGFQRDQNLQLHRRGH 456
89******************988 PP
| |||||||
| 3 | zf-C2H2 | 11.2 | 0.0011 | 550 | 568 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS
zf-C2H2 5 dCgksFsrksnLkrHirtH 23
dCg++Fsr++++++H +
Zmw_sc01983.1.g00170.1.am.mk 550 DCGTVFSRRDSFVTHRAFC 568
9**************8765 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.20.10 | 1.1E-40 | 92 | 188 | IPR009072 | Histone-fold |
| SuperFamily | SSF47113 | 5.87E-32 | 95 | 187 | IPR009072 | Histone-fold |
| Pfam | PF00808 | 1.0E-22 | 98 | 161 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
| PRINTS | PR00615 | 6.2E-13 | 125 | 143 | No hit | No description |
| PRINTS | PR00615 | 6.2E-13 | 144 | 162 | No hit | No description |
| PRINTS | PR00615 | 6.2E-13 | 163 | 181 | No hit | No description |
| SuperFamily | SSF57667 | 2.08E-5 | 433 | 456 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 1.9E-4 | 433 | 456 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 10.637 | 434 | 456 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 436 | 456 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 2.08E-5 | 515 | 540 | No hit | No description |
| Gene3D | G3DSA:3.40.50.1820 | 5.8E-37 | 895 | 1008 | IPR029058 | Alpha/Beta hydrolase fold |
| SuperFamily | SSF53474 | 1.55E-34 | 896 | 1104 | IPR029058 | Alpha/Beta hydrolase fold |
| Pfam | PF00561 | 3.8E-14 | 896 | 1000 | IPR000073 | Alpha/beta hydrolase fold-1 |
| Gene3D | G3DSA:3.40.50.1820 | 1.2E-14 | 1009 | 1104 | IPR029058 | Alpha/Beta hydrolase fold |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003676 | Molecular Function | nucleic acid binding | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| GO:0046982 | Molecular Function | protein heterodimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1106 aa Download sequence Send to blast |
LYYCASAREL SRSAVVSTLI RLDPRPRAVA LDAIIVAMRG PHGLSADVAR LGHPSITPSP 60 PQEKNAASLA APARASSSAS TEVDGGGGGM NSAHDNLLPI ANVGRIMKDV LPPQAKISKR 120 AKETIQECAT EFIGFVTGEA SERCRRERRK TINGDDICHA MRSLGLDNYA DTMRRYLQRY 180 RESEELAAAI NSSSGREIQI DVRDELSIFR GSEQHPLILD STGSRAAWAG HWAVIFSPRD 240 KVAQPISANN CSVFCCRYWT HWPSTFGAVF GFRKNGAAGD SPAGRRRPTC PPLCRPSDAP 300 KAWPPHCVRV RRYADGEDGR GSGHFSSPIK SRVRQAVNVD VHRRTAAAGV STQVEEELLQ 360 QRPQRWYRVI KPFMGSPPAM GNGDDGDLQR ITGTSEPLAA PPAAKKKRSL PGTPDPSAEV 420 IALSPKTLTA TNRFVCEICH KGFQRDQNLQ LHRRGHNLPW KLRQRAGRGG TADGGGGGPP 480 RKRVYVCPEA SCVHHNPARA LGDLTGIKKH YCRKHGDKKW KCERCAKRYA VQSDWKAHAK 540 VCGTREYKCD CGTVFSRRDS FVTHRAFCDA LAQENSKLVQ PVNMAATVAS RLQGNQAAHL 600 HLELQADDYL DAVEDDFVTN TTSWSPQLRL LPVSDDVSNP LILPSPLGML SSLAARTVAP 660 SPAAFPFRGS TNIGAMGLNG PPVDATVGFA SASMSATALL QKAAALGATT SSEFGPMLSP 720 FGPVRDGFPS PVQTQLVGFD VGGGPFPGQY YSGGPMTRAI GLLMQGGLRV PDRPREDDKR 780 VVDYMGVDDD QSLGMDPFLR EVMGLGLTLP SRSVRFWGNP NPSSVSYISE PPLRPSTGAG 840 RGDFCVSGFE GCLTSLDDAG ERLVLVGHGK SSIDRAVSVS QRKIIAAVEL VAPVKHFFLV 900 HGLAHGAWCW YKVVAPLRAA GHRVTALDLA ASGVHPARIE EVASFEDYSR PLLEAVAAAT 960 DGERLVLVGH SLGGLTVALA MERFPRKIAA AVFLAASMPC VGKHMGVTIE EDLELAKLLA 1020 RPGSQYMEDP IMKDETLLTD GNYGAVKRVF VIAMADSSMT EEMQRQMIEL SPGAEVEEIA 1080 GADHMAMLSK PRELCDVLIK IANKFD |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 3sty_A | 3e-55 | 895 | 1105 | 13 | 266 | Methylketone synthase 1 |
| 3sty_B | 3e-55 | 895 | 1105 | 13 | 266 | Methylketone synthase 1 |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A0A0E0JTD1 | 0.0 | A0A0E0JTD1_ORYPU; Uncharacterized protein | ||||
| STRING | OPUNC01G42220.1 | 0.0 | (Oryza punctata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP12554 | 25 | 34 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|