PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01972.1.g00160.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 567aa    MW: 61108.3 Da    PI: 9.3897
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01972.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.2e-17179226148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rgrWT+ Ede+l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
  Zmw_sc01972.1.g00160.1.am.mk 179 RGRWTAKEDEILASYIAKHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 226
                                   89******************************99************97 PP
2Myb_DNA-binding40.37.3e-13232338148
                                   TSSS-HHHHHHHHHHHHHTTTT........................................................... CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg........................................................... 22 
                                   rg+ ++eE+++++++++ lG+                                                            
  Zmw_sc01972.1.g00160.1.am.mk 232 RGNISKEEEDIIIKLHATLGNSlkeaqghdsrdprsrlrfgggelssvptpksssrhsvkrtgvgcyvhrwsvpvrvpagl 312
                                   7899****************99*********************************************************** PP

                                   .-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  23 .tWktIartmgkgRtlkqcksrwqkyl 48 
                                    tW++Ia++++ gRt++++k++w+++l
  Zmw_sc01972.1.g00160.1.am.mk 313 mTWSLIASHLP-GRTDNEIKNYWNSHL 338
                                   ***********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.6E-22170229IPR009057Homeodomain-like
PROSITE profilePS5129421.372174230IPR017930Myb domain
SMARTSM007174.7E-12178228IPR001005SANT/Myb domain
PfamPF002495.0E-15179226IPR001005SANT/Myb domain
SuperFamilySSF466894.22E-20180253IPR009057Homeodomain-like
CDDcd001674.82E-10181226No hitNo description
PROSITE profilePS500907.503227338IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.3E-20230250IPR009057Homeodomain-like
SMARTSM007171.1E-11231340IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-20311342IPR009057Homeodomain-like
PfamPF002492.9E-7314338IPR001005SANT/Myb domain
SuperFamilySSF466894.34E-7314343IPR009057Homeodomain-like
CDDcd001671.57E-6315338No hitNo description
PfamPF066402.6E-65356566IPR010588Myb-related protein P, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MIDLPRAPGW PGCRLLAPLA PVRSVANKVV FRRSDGADGG EEGDIARRTG RPSYLGAKRA  60
ADNVVAREAA EGNGGESRRH GALFPAGGQV SAAPATRPRT RAPACYRDRR KRNPTRRWLT  120
GAGERNESAI TRMAGPRPRA RAACYITAPA RTDSRVPVGR PRTRAMGRAP CCEKVGLKRG  180
RWTAKEDEIL ASYIAKHGEG SWRSLPKNAG LLRCGKSCRL RWINYLRADV KRGNISKEEE  240
DIIIKLHATL GNSLKEAQGH DSRDPRSRLR FGGGELSSVP TPKSSSRHSV KRTGVGCYVH  300
RWSVPVRVPA GLMTWSLIAS HLPGRTDNEI KNYWNSHLSR QIHTYRRIFT AGNDTTITID  360
ISKLHCAGKR RGGRTPGRSA LKSTTSSDDK TGSKKVDAEP EPAETTTKAK EASAFSPAAA  420
TSAASSPPQS DDGARSVVVD QDQNQPNSVS DNTPDGPCSE DASGPMTSLL EEPLDLGLWE  480
AETEMDMEAL LLSNTGIDGA AGYSSSFTTG LEAAAGDDLL DMDWDGFAAH LWGDPAQNNQ  540
AAAEPQAAAG CNPEELESFA TWLLSDF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00598PBMTransfer from AT5G49330Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797897.11e-125myb-related protein P-like
SwissprotP278985e-82MYBP_MAIZE; Myb-related protein P
TrEMBLA0A0E0KCP61e-125A0A0E0KCP6_ORYPU; Uncharacterized protein
TrEMBLA0A2S3IRB61e-124A0A2S3IRB6_9POAL; Uncharacterized protein
STRINGOPUNC03G13890.11e-125(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Publications ? help Back to Top
  1. Robbins ML,Sekhon RS,Meeley R,Chopra S
    A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize.
    Genetics, 2008. 178(4): p. 1859-74
    [PMID:18430921]
  2. Sidorenko L,Chandler V
    RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene.
    Genetics, 2008. 180(4): p. 1983-93
    [PMID:18845841]
  3. Robbins ML,Wang P,Sekhon RS,Chopra S
    Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism.
    PLoS ONE, 2009. 4(12): p. e8231
    [PMID:20011605]
  4. Rhee Y,Sekhon RS,Chopra S,Kaeppler S
    Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize.
    Genetics, 2010. 186(3): p. 843-55
    [PMID:20823340]
  5. Morohashi K, et al.
    A genome-wide regulatory framework identifies maize pericarp color1 controlled genes.
    Plant Cell, 2012. 24(7): p. 2745-64
    [PMID:22822204]