PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01967.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | SRS | ||||||||
Protein Properties | Length: 337aa MW: 33402.8 Da PI: 8.2405 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 215.8 | 1e-66 | 111 | 269 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrel 78 ++sCqdCGn+akkdCah+RCRtCC+srgf+C thvkstWvpaakrrerqqqlaa+ ++aa+++ a+a skr+rel Zmw_sc01967.1.g00090.1.sm.mk 111 AGTSCQDCGNNAKKDCAHMRCRTCCRSRGFSCPTHVKSTWVPAAKRRERQQQLAALFHSAANNSasaavaAAAVSKRPREL 191 4579****************************************************9999888878888888899999998 PP DUF702 79 ..kskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + + ++ss+ +++++s+ + s+P+e+s+eavfrcvr++ vd+ ++elaYqtavsigGh+fkGiL+d+G+++ Zmw_sc01967.1.g00090.1.sm.mk 192 vrSLGRLPSASSAMVATTTSSGDGSGGSFPPELSVEAVFRCVRIGPVDEPDAELAYQTAVSIGGHTFKGILRDHGPAD 269 5533344444555555555555666788***********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.4E-63 | 112 | 268 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.2E-25 | 114 | 156 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.4E-18 | 220 | 267 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MAGFSLRGGG GGGGGRGGDR GGDHSIGADN LFLYARGAAA AAADTAGGGG GGIGFQLWHP 60 HQQAAAAAAP HTSQFFSSGG VATGVVLGFS SHDGGGGIGG AGGGGTGGGR AGTSCQDCGN 120 NAKKDCAHMR CRTCCRSRGF SCPTHVKSTW VPAAKRRERQ QQLAALFHSA ANNSASAAVA 180 AAAVSKRPRE LVRSLGRLPS ASSAMVATTT SSGDGSGGSF PPELSVEAVF RCVRIGPVDE 240 PDAELAYQTA VSIGGHTFKG ILRDHGPADD AAVGQLPPSS AEYHQLTGAG REESSPAGSS 300 EAAATAVTSA AVLMDPYPTP IGAFAAGTQF FPHNPRT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 15 | RGGGGGGGGR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008645076.1 | 1e-153 | protein SHI RELATED SEQUENCE 1 | ||||
Refseq | XP_008645077.1 | 1e-153 | protein SHI RELATED SEQUENCE 1 | ||||
Refseq | XP_008645078.1 | 1e-153 | protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A2T7DU75 | 1e-157 | A0A2T7DU75_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J38504.1.p | 1e-157 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1354 | 35 | 124 |