PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01967.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 315aa    MW: 34535.2 Da    PI: 10.2595
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01967.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.81.4e-28132182151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   krien +nrqvt+skRr+gi+KKA EL vLCda+va+i+fsstgk +e++s
  Zmw_sc01967.1.g00070.1.am.mk 132 KRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCS 182
                                   79***********************************************96 PP
2K-box48.53.7e-171862401468
                         K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRsk 68 
                                   ++++q+ l+ Lk+ ++nL++e+R+++GedL+ L++ eL+ Leq+++ +lk+++  
  Zmw_sc01967.1.g00070.1.am.mk 186 ESNMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRGLEQNVDVALKEVKHS 240
                                   579*************************************************864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.59124184IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-42124183IPR002100Transcription factor, MADS-box
CDDcd002657.64E-40125191No hitNo description
SuperFamilySSF554557.59E-31125195IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-28126146IPR002100Transcription factor, MADS-box
PfamPF003195.1E-24133180IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-28146161IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-28161182IPR002100Transcription factor, MADS-box
PfamPF014861.2E-11186239IPR002487Transcription factor, K-box
PROSITE profilePS512978.685186279IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MELRYVLAGS PTNGTSLLLA TTAPPILSRA RHEASQARQH GATGRHGQAR RPTLSPIRQL  60
SVTVARPGLV LATPKSLSQL KSSSGSLART RSSHQLLALL DLKKSVGPEK QLARSTTEDL  120
DKKMGRGKIE IKRIENATNR QVTYSKRRTG IMKKARELTV LCDAQVAIIM FSSTGKYHEF  180
CSPGTESNMQ RTLSHLKDIN RNLRTEIRQR MGEDLDGLEF DELRGLEQNV DVALKEVKHS  240
YEAYRNLQQE LGMREEPAYG YVDNTGAGWD GAVAQLGGGG SAATATATDM YAFRVVPTQP  300
NLHGVAYGSH DLRLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-16124219192MEF2C
5f28_B8e-16124219192MEF2C
5f28_C8e-16124219192MEF2C
5f28_D8e-16124219192MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS4. {ECO:0000269|PubMed:12506001, ECO:0000269|PubMed:12905025, ECO:0000269|PubMed:14558657}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812646.11e-114MADS-box transcription factor 16
SwissprotQ944S91e-99MAD16_ORYSJ; MADS-box transcription factor 16
TrEMBLA0A2S3HGN11e-113A0A2S3HGN1_9POAL; Uncharacterized protein
TrEMBLA0A2T7DU701e-113A0A2T7DU70_9POAL; Uncharacterized protein
STRINGSi007221m1e-113(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57283552
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chen ZX, et al.
    Morphogenesis and molecular basis on naked seed rice, a novel homeotic mutation of OsMADS1 regulating transcript level of AP3 homologue in rice.
    Planta, 2006. 223(5): p. 882-90
    [PMID:16254725]
  3. Zhang Q, et al.
    Morphological, anatomical and genetic analysis for a rice mutant with abnormal hull.
    J Genet Genomics, 2007. 34(6): p. 519-26
    [PMID:17601611]
  4. Yoshida H, et al.
    superwoman1-cleistogamy, a hopeful allele for gene containment in GM rice.
    Plant Biotechnol. J., 2007. 5(6): p. 835-46
    [PMID:17764519]
  5. Yao SG,Ohmori S,Kimizu M,Yoshida H
    Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development.
    Plant Cell Physiol., 2008. 49(5): p. 853-7
    [PMID:18378529]
  6. Xiao H, et al.
    STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice.
    Plant J., 2009. 59(5): p. 789-801
    [PMID:19453444]
  7. Seok HY, et al.
    Rice ternary MADS protein complexes containing class B MADS heterodimer.
    Biochem. Biophys. Res. Commun., 2010. 401(4): p. 598-604
    [PMID:20888318]
  8. Li H, et al.
    Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
    Plant Cell, 2011. 23(7): p. 2536-52
    [PMID:21784949]
  9. Sato H,Yoshida K,Mitsuda N,Ohme-Takagi M,Takamizo T
    Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58.
    Plant Sci., 2012. 183: p. 183-9
    [PMID:22195592]
  10. Ohmori S,Tabuchi H,Yatou O,Yoshida H
    Agronomic traits and gene containment capability of cleistogamous rice lines with the superwoman1-cleistogamy mutation.
    Breed. Sci., 2012. 62(2): p. 124-32
    [PMID:23136523]
  11. Yun D, et al.
    OsMADS16 genetically interacts with OsMADS3 and OsMADS58 in specifying floral patterning in rice.
    Mol Plant, 2013. 6(3): p. 743-56
    [PMID:23300256]
  12. Lombardo F, et al.
    The superwoman1-cleistogamy2 mutant is a novel resource for gene containment in rice.
    Plant Biotechnol. J., 2017. 15(1): p. 97-106
    [PMID:27336225]