PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc01965.1.g00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 203aa MW: 23273.3 Da PI: 8.4789 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 8.1e-18 | 33 | 77 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 gr++++E+ l++d+++++G++ W++Iar+++ gRt++++k++w++++ Zmw_sc01965.1.g00120.1.sm.mkhc 33 GRMSPQEERLIIDLHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 77 89*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.832 | 1 | 26 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-9 | 12 | 39 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.0E-21 | 12 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.826 | 27 | 81 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-16 | 31 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 33 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.42E-12 | 34 | 77 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 40 | 78 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 203 aa Download sequence Send to blast |
MLHHLRVHSG LNRTGKSCRL RWVNYLHPGL KHGRMSPQEE RLIIDLHARW GNRWSRIARR 60 LPGRTDNEIK NYWRTHMRKK AQERNMRTSP SSSSSSLTYQ SCFLDATPNA GMISNGARNS 120 SSCITSTLES IQTATDGYPM EQIWNEVDAP SMLGIDEPKE NAYGTLPCPL PSAAMLDYKC 180 PEVFWKIEDD EIWMSAPQFD YGN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 8e-18 | 13 | 81 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 3e-17 | 13 | 81 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-17 | 13 | 81 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-17 | 13 | 81 | 60 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 1e-17 | 13 | 81 | 37 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-17 | 13 | 81 | 37 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980031.1 | 1e-101 | myb-related protein MYBAS1 | ||||
Swissprot | Q53NK6 | 1e-89 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | K3ZJP9 | 1e-100 | K3ZJP9_SETIT; Uncharacterized protein | ||||
STRING | Si026803m | 1e-100 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Publications ? help Back to Top | |||
---|---|---|---|
|