PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01950.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 481aa    MW: 51536.1 Da    PI: 7.6297
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01950.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.7e-1593140148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g W++eEde+lv +  + G g+W+ +ar  g+ R++k+c++rw +yl
  Zmw_sc01950.1.g00020.1.am.mk  93 KGLWSPEEDEKLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYL 140
                                   678*******************************************97 PP
2Myb_DNA-binding51.91.8e-16146189146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg+++++E+el+v +++ lG++ W+ Ia++++ gRt++++k++w++
  Zmw_sc01950.1.g00020.1.am.mk 146 RGAFSPQEEELIVSLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 189
                                   89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.10488140IPR017930Myb domain
SuperFamilySSF466892.85E-2891187IPR009057Homeodomain-like
SMARTSM007178.7E-1192142IPR001005SANT/Myb domain
PfamPF002493.6E-1393140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2294147IPR009057Homeodomain-like
CDDcd001674.93E-996140No hitNo description
PROSITE profilePS5129425.339141195IPR017930Myb domain
SMARTSM007179.6E-16145193IPR001005SANT/Myb domain
PfamPF002497.4E-15146189IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-25148196IPR009057Homeodomain-like
CDDcd001673.53E-11148188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MHVRVGEIIP TLALNKWTES RGDHGHVMEY TGSSSTIRTS TSSTCTRARP RDQSRRDRSK  60
IELDRRAGDR SGSMRKPECP TAAAVSGGAK LRKGLWSPEE DEKLVAYMLR SGQGSWSDVA  120
RNAGLQRCGK SCRLRWINYL RPDLKRGAFS PQEEELIVSL HAILGNRWSQ IAARLPGRTD  180
NEIKNFWNST IKKRLKSSSS AASSPAPASD HCALSPDQPS NTKLAGGRGG IDASSCPDLA  240
DLDRVDGGHH LHAVTSASGL WMVDSSSSIS SSTAARSYGN GHGGLLPLPD QLRGVAADNT  300
PPPFFHSHAP PPFKHQAVSA LHGGYYGGSG HQHHGVAVEG CFGRGGEGLF GYVPPLLAEP  360
AAMAAAQDQD RKPLMASSGN GNNPITGNSS NNTTETTTTT TTLSNNESNI TDNMNKDSSC  420
LENSNVAAAA AVYWDGAHHQ QLHMSSRNVM QLQGGGGECC WDLEELMKDV SSLPFLDFQV  480
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-28871971110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00599PBMTransfer from AT5G12870Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808414.11e-140myb-related protein 330-like
TrEMBLA0A1E5W8981e-149A0A1E5W898_9POAL; Transcription factor MYB46
STRINGPavir.Ca02370.1.p1e-143(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98213545