PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01949.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 521aa MW: 57234.1 Da PI: 11.1072

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01949.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53	7.9e-17	224	265	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + eE+ l +d+++qlG++ W++Ia++++ gRt++++k++w+++ Zmw_sc01949.1.g00020.1.am.mk 224 LSDEEEALVIDLHAQLGNR-WSKIAARIP-GRTDNEIKNHWNTH 265 589**************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-5	195	216	IPR009057	Homeodomain-like
PROSITE profile	PS50090	4.17	202	215	IPR017877	Myb-like domain
SuperFamily	SSF46689	6.84E-21	202	275	IPR009057	Homeodomain-like
PROSITE profile	PS51294	27.435	216	270	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-24	217	270	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-15	220	268	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-14	224	265	IPR001005	SANT/Myb domain
CDD	cd00167	2.46E-12	225	266	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MVSIKNKIQD AIPFRTVGGG PRVWRRDPVA SKVRRVQCCR RDLTGLRLFV PLSVGEEGTR 60 SNSNKSAVRT PIQLQVQRTH RRRSQDPPAV LRSIRNELTR RLGFPPRARD GPFHFGPRLL 120 IPRRCASSPN QGREPGRWLA AAAATASSAL ALFSRPQLNL REPRAETRKS TSVLVVSFTF 180 CVVHGKRARD GQAAVLRQGL LRCGKSCRLR WTNYLRPDLK RGLLSDEEEA LVIDLHAQLG 240 NRWSKIAARI PGRTDNEIKN HWNTHIKKKL RKMGIDPVTH RPLSPAAQSG EPLTQQQCQD 300 PPQDEPKTSS QRPAGGNEDD DGDEEAPVSA AQPQLAAASP ASAAATVSPS CSSSASDSVT 360 TTPGADVAAW SDPVDLFEVD GIMDMDWAGI LSGCGGDGAG ISVDLFDHYP GDGFDQQRWA 420 NAAYPRQQVR NKCVAFVRRQ SNYPVPFPFR RPPQTKAEQS MPRHLLVPAS KATPALARMF 480 CHLVPALLSR GVTSASRHGC VTGFVRERLP RVSAGFVLSR R

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MVSIKNKIQD AIPFRTVGGG PRVWRRDPVA SKVRRVQCCR RDLTGLRLFV PLSVGEEGTR  60
SNSNKSAVRT PIQLQVQRTH RRRSQDPPAV LRSIRNELTR RLGFPPRARD GPFHFGPRLL  120
IPRRCASSPN QGREPGRWLA AAAATASSAL ALFSRPQLNL REPRAETRKS TSVLVVSFTF  180
CVVHGKRARD GQAAVLRQGL LRCGKSCRLR WTNYLRPDLK RGLLSDEEEA LVIDLHAQLG  240
NRWSKIAARI PGRTDNEIKN HWNTHIKKKL RKMGIDPVTH RPLSPAAQSG EPLTQQQCQD  300
PPQDEPKTSS QRPAGGNEDD DGDEEAPVSA AQPQLAAASP ASAAATVSPS CSSSASDSVT  360
TTPGADVAAW SDPVDLFEVD GIMDMDWAGI LSGCGGDGAG ISVDLFDHYP GDGFDQQRWA  420
NAAYPRQQVR NKCVAFVRRQ SNYPVPFPFR RPPQTKAEQS MPRHLLVPAS KATPALARMF  480
CHLVPALLSR GVTSASRHGC VTGFVRERLP RVSAGFVLSR R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-20	202	270	40	108	B-MYB

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP79	38	563