PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01940.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 447aa MW: 49714.1 Da PI: 10.6985

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01940.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	407	429	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ +Cgk+F + s L++H +H Zmw_sc01940.1.g00010.1.am.mk 407 CSyeNCGKTFVDVSALRKHAHVH 429 77779**************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03140	8.0E-27	41	207	IPR004158	Protein of unknown function DUF247, plant
Gene3D	G3DSA:3.30.160.60	1.7E-13	400	431	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.68E-7	400	443	No hit	No description
PROSITE profile	PS50157	11.385	405	434	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	407	429	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MAHRSSGRWR MSSAPPWRSS GRRRASRARR SVVRSCPWWN PRTAVELAEM GVKLAASKSK 60 MFGDMSVYKR RPGLSLSGEL SLAPLVLNEL TACWLTNVAA YEACLGATQA DNFAVSSYIS 120 LVALLINRKE EAQELRAKGI INSAFRDKAT LGFFKSLAPF LHVGHRYCQV FERLQEYKQE 180 RGVWIAVHRF LYKNIKTIVA LLSVAGVLAG LFKTILSVKH QGKAFSSGAP PLHPPTDGPQ 240 QREGEEREGT NPSRPSHPSR STAAKGASGM EYLPPAAAAG SGGYRQYYQQ QPHSQALRRA 300 PPRPAARWVK QWCAFLSPAP CLSRTYSLSR WKSSMLLPSV PLITERNPTR RSCFTRRIPQ 360 DLAASGGKCS LFKWVRADGH RSSKENHKGL EAEAPKPEPT SEILFLCSYE NCGKTFVDVS 420 ALRKHAHVHG ERQYICQEPN CGKTVVR

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MAHRSSGRWR MSSAPPWRSS GRRRASRARR SVVRSCPWWN PRTAVELAEM GVKLAASKSK  60
MFGDMSVYKR RPGLSLSGEL SLAPLVLNEL TACWLTNVAA YEACLGATQA DNFAVSSYIS  120
LVALLINRKE EAQELRAKGI INSAFRDKAT LGFFKSLAPF LHVGHRYCQV FERLQEYKQE  180
RGVWIAVHRF LYKNIKTIVA LLSVAGVLAG LFKTILSVKH QGKAFSSGAP PLHPPTDGPQ  240
QREGEEREGT NPSRPSHPSR STAAKGASGM EYLPPAAAAG SGGYRQYYQQ QPHSQALRRA  300
PPRPAARWVK QWCAFLSPAP CLSRTYSLSR WKSSMLLPSV PLITERNPTR RSCFTRRIPQ  360
DLAASGGKCS LFKWVRADGH RSSKENHKGL EAEAPKPEPT SEILFLCSYE NCGKTFVDVS  420
ALRKHAHVHG ERQYICQEPN CGKTVVR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP35903	2	2