PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01927.1.g00180.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 267aa    MW: 29026.4 Da    PI: 8.0884
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01927.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.3e-2489184183
                                   EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS.....-EEEEEE..EEETTEEEE-TTHHHH CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesg.....rsWevkliyrkksgryvltkGWkeF 68 
                                   f+k+ tpsdv++++rlv+pk +ae+h        + + + ++ l +ed +      ++W+++++y+ +s++yvlt+GW++F
  Zmw_sc01927.1.g00180.1.sm.mk  89 FEKAVTPSDVGRLNRLVVPKVHAEKHfpplsekdDDDDAAPVLLAFEDADPnagngKVWRFRFSYWSSSQSYVLTRGWSRF 169
                                   89****************************99996667899999999987667788************************* PP

                                   HHHHT--TT-EEEEE CS
                            B3  69 vkangLkegDfvvFk 83 
                                   v+++gL +gD+++F+
  Zmw_sc01927.1.g00180.1.sm.mk 170 VREKGLAAGDTITFS 184
                                   **************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-3381186IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-2684185IPR015300DNA-binding pseudobarrel domain
CDDcd100175.02E-2587183No hitNo description
PROSITE profilePS5086312.61989197IPR003340B3 DNA binding domain
SMARTSM010192.4E-1589198IPR003340B3 DNA binding domain
PfamPF023622.3E-2189184IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MSTPSSTQEE AQRAGMVASQ AAPASRYKGV VPQPKGRWGA QIYERHARAE VVDMLRKHTY  60
DDELRQGLRS VSGSGGVCEA DPVPRTPLFE KAVTPSDVGR LNRLVVPKVH AEKHFPPLSE  120
KDDDDDAAPV LLAFEDADPN AGNGKVWRFR FSYWSSSQSY VLTRGWSRFV REKGLAAGDT  180
ITFSQAATPP TPTTTSADGE AYTARRLFIE CRKRKRTRTD SDGSVVVDGC PDHGGDARVV  240
RLFGANIAAA IGGHAFVEVE PQLQVGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-388818613103DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806570.12e-86AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS73e-69Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A3L6R5X17e-88A0A3L6R5X1_PANMI; Uncharacterized protein
STRINGOBART01G02620.12e-74(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203