PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01923.1.g00110.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 274aa MW: 29837.9 Da PI: 8.8907

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01923.1.g00110.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.8	1.5e-12	162	188	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 y +C+++ +tG+C yGd+CkF+Hg+ Zmw_sc01923.1.g00110.1.am.mkhc 162 YQPDICKDYKETGYCGYGDSCKFMHGR 188 67789********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.3E-9	160	192	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.9E-8	161	188	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.68	161	189	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.9E-10	162	188	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.2E-13	162	192	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MLARITNALP ALLRPGNHPK NIRKRPAAPT DSDDEDGGGG DIAALLSKKG PSAPGKFVFS 60 STDGSGEPRR PPRTAAPPPP SRRRRSSTAT HQVKQAEETL KKNPSASSSA SGSGEVYKGI 120 HGYTDYKAGF RREHTVSSEK AGGSHGPLRA SAHIRVSARF DYQPDICKDY KETGYCGYGD 180 SCKFMHGRGD YKSGWQLEKE YVEAEKARKR RIAMGGGDGS DDEAAEDDDD DDDEEAHHSK 240 NKKCFVCNKP TLGIFNAAQE IRRKMAQDKQ QQDG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5z56_M	2e-28	116	274	152	326	RING finger protein 113A
5z58_M	2e-28	116	274	152	326	RING finger protein 113A
6ff4_t	2e-28	116	274	152	326	RING finger protein 113A
6ff7_t	2e-28	116	274	152	326	RING finger protein 113A
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020156391.1	1e-111	zinc finger CCCH domain-containing protein 15
Swissprot	Q6K4V3	5e-95	C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBL	A0A3B6JMH3	1e-110	A0A3B6JMH3_WHEAT; Uncharacterized protein
TrEMBL	A0A453IHI9	1e-110	A0A453IHI9_AEGTS; Uncharacterized protein
TrEMBL	F2DBY5	1e-110	F2DBY5_HORVV; Predicted protein
STRING	Traes_4AS_866E12EE7.1	1e-110	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8071	36	45

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]