PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01905.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 327aa    MW: 35315.2 Da    PI: 5.5256
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01905.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-19108157255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     +++G+r+++ +g+WvAeIrdp     + +r++lg+f tae+Aa+a++  +++l+g
  Zmw_sc01905.1.g00110.1.sm.mkhc 108 HFRGIRQRP-WGKWVAEIRDPH----KgTRVWLGTFNTAEDAARAYDVEARRLRG 157
                                     69*******.**********72....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-32107165IPR001471AP2/ERF domain
SMARTSM003804.4E-36108171IPR001471AP2/ERF domain
PfamPF008471.1E-11108157IPR001471AP2/ERF domain
CDDcd000181.06E-29108167No hitNo description
SuperFamilySSF541717.19E-22108166IPR016177DNA-binding domain
PROSITE profilePS5103223.222108165IPR001471AP2/ERF domain
PRINTSPR003672.7E-11109120IPR001471AP2/ERF domain
PRINTSPR003672.7E-11131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MCGGAILAEL IPPTRRAASL PVTAGGNLWP ASSKNGGRAR DNKKHVAEID DFEAAFEEFD  60
DFDEVEEDGD YGYDGSRARP FVFASKPALS SAHDGRAARQ RKRGSRRHFR GIRQRPWGKW  120
VAEIRDPHKG TRVWLGTFNT AEDAARAYDV EARRLRGSKA KVNFPAAGAR PRRAKARPAP  180
KAQPPPAAAQ LASLGGQKKK QEELVAEPET MMAAFNMDNL LDLTFLAAPP VTASSFTDSA  240
GSESGAPVKK QRTDNSSDGS ATLELTDELE FDPFMFFQLP YMDGGYESID SLFAGGEAGQ  300
DVNTVNSDMN GTALLFIQSD AGAEGSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-22107165463ATERF1
3gcc_A8e-22107165463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791485.11e-112ethylene-responsive transcription factor 1-like
RefseqXP_025791486.11e-112ethylene-responsive transcription factor 1-like
TrEMBLA0A0A9VK361e-118A0A0A9VK36_ARUDO; Uncharacterized protein
STRINGPavir.Ib00526.1.p1e-116(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040