PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01893.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 454aa    MW: 49913.6 Da    PI: 9.6435
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01893.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.2e-06125147123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++Cgk F r  nL+ H r H
  Zmw_sc01893.1.g00110.1.am.mk 125 FVCEICGKGFQRDQNLQLHRRGH 147
                                   89*******************88 PP
2zf-C2H213.50.00021201223123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +C+k++  +s+ k H +t+
  Zmw_sc01893.1.g00110.1.am.mk 201 WKCDKCNKRYAVQSDWKAHSKTC 223
                                   58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.21E-7124147No hitNo description
PROSITE profilePS5015711.614125147IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-5125147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012125147IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
SMARTSM00355250166196IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.4E-5189222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.21E-7196221No hitNo description
SMARTSM00355110201221IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MALTDHQTIW EQRSQTIWEL ELKPPRGVNC EGGVVLNQAS RFSSAPRGAC ADLPAAPLTN  60
GPRKSKAIEQ WQVRTEAAML NRALELAPPA KRKRNLPGTP GKSSCYPDAE VIALSPRTLL  120
ATNRFVCEIC GKGFQRDQNL QLHRRGHNLP WKLRQRSGKE PRKRVYVCPE KTCVHHNPSR  180
ALGDLTGIKK HFCRKHGEKK WKCDKCNKRY AVQSDWKAHS KTCGTREYRC DCGTLFSRRD  240
SFVTHRAFCD ALAEETARLN NQRQNHNPYL LAAASSSTTP PASISLMPSM GHIANVLAGA  300
GEPTAPSPQL PLTTWQFDST SSLQQLGWLY DGNNNGRKLS ISKDVPSLFS SEQHANPAAP  360
APDMSATALL QKATQIGAVT SSVVGTCFEP SGASSHRQQN SRLGNVPFDD VLSAVRHAGL  420
EQLDAVGREE TRDFLGVGMQ QALCSSSLPL HGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-35197266372Zinc finger protein JACKDAW
5b3h_F9e-35197266372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818706.11e-157zinc finger protein MAGPIE-like
RefseqXP_025818707.11e-157zinc finger protein MAGPIE-like
SwissprotQ9ZWA61e-111IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A1E5VAN51e-159A0A1E5VAN5_9POAL; Zinc finger protein MAGPIE
STRINGOS01T0242200-011e-151(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]