PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01893.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 244aa MW: 26831.8 Da PI: 4.6082 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 78.7 | 6.9e-25 | 140 | 189 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k +++WtpeLH+rFv+aveqL G++kA+P++ile+m+++gLt+++++SHLQ Zmw_sc01893.1.g00060.1.am.mk 140 KRKVNWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIEGLTRHNIASHLQ 189 5799*****************.***************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.14 | 137 | 196 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-23 | 138 | 189 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.24E-15 | 140 | 189 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.7E-24 | 140 | 190 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-7 | 142 | 189 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
LDVDVGFPTS TDCGGVDEFM AVDGDNLLEY IDFTCCDVVP SFFDADGDIL PDLETELLAE 60 FEDHDDKENE DEKWLLLEEE EDHRKKRSGS SEDEVLLSAA TTEDSAAAAG SSSDTSKSSS 120 VSAEGQISKK KKSSKKSNGK RKVNWTPELH RRFVQAVEQL GIDKAVPSRI LEIMGIEGLT 180 RHNIASHLQV NGVVSIRFVY NIFLGPKRAK RRRQAGAGST PQDNACTALL QPPARRSRSS 240 DMIE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 4e-15 | 142 | 189 | 3 | 50 | Transcription factor LUX |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 211 | PKRAKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:11340194}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967344.1 | 5e-50 | probable transcription factor GLK2 | ||||
Swissprot | Q5NAN5 | 5e-43 | GLK2_ORYSJ; Probable transcription factor GLK2 | ||||
TrEMBL | A0A0A9LLL4 | 1e-52 | A0A0A9LLL4_ARUDO; Uncharacterized protein | ||||
STRING | Si001336m | 2e-49 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2415 | 38 | 86 |
Publications ? help Back to Top | |||
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