PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01888.1.g00150.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 539aa    MW: 57913.6 Da    PI: 9.7712
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01888.1.g00150.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.1e-161461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WTteEd++lv     +G  +W+++++  g+ R++k+c++rw +yl
  Zmw_sc01888.1.g00150.1.am.mk 14 KGPWTTEEDQKLVTFLLSHGHCCWRLVPKLAGLLRCGKSCRLRWTNYL 61
                                  79******************************99************97 PP
2Myb_DNA-binding48.32.3e-1570131447
                                   S-HHHHHHHHHHHHHTTTT...................-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   4 WTteEdellvdavkqlGgg...................tWktIartmgkgRtlkqcksrwqky 47 
                                    + eE+ l +d+++qlG++                   +W++Ia++++ gRt++++k++w+++
  Zmw_sc01888.1.g00150.1.am.mk  70 LSDEEEALVIDLHAQLGNRslagrwlvppkltaplvfcRWSKIAARLP-GRTDNEIKNHWNTH 131
                                   589*********************************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-20562IPR009057Homeodomain-like
PROSITE profilePS5129420.991965IPR017930Myb domain
SMARTSM007172.5E-121363IPR001005SANT/Myb domain
SuperFamilySSF466893.02E-221465IPR009057Homeodomain-like
PfamPF002495.2E-141461IPR001005SANT/Myb domain
CDDcd001671.11E-91661No hitNo description
Gene3DG3DSA:1.10.10.605.7E-2263136IPR009057Homeodomain-like
PROSITE profilePS5129414.60766136IPR017930Myb domain
SMARTSM007176.9E-1166134IPR001005SANT/Myb domain
PfamPF002492.2E-1270131IPR001005SANT/Myb domain
CDDcd001671.19E-971132No hitNo description
SuperFamilySSF466893.02E-22105133IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MGRQPCCEKV GLKKGPWTTE EDQKLVTFLL SHGHCCWRLV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SDEEEALVID LHAQLGNRSL AGRWLVPPKL TAPLVFCRWS KIAARLPGRT  120
DNEIKNHWNT HIKKKLRKMG IDPVTHRPLS PSQSGEPLSQ QRQQRQDPPH EREKGRDETK  180
ASSEGPAGSD QDDESEETPV SGAQPQVAAA SSPASTAATV SPSCSSSGSA SVATPGADVA  240
AWPDPIDLFE VDGMMDLDWA AILSGCGDDG AGMNVDLFDH YPGDGFDEQV WSMHGLRRGE  300
KPVPVVARSI TGVVVEPAAH EEVDLVRSPA SAGNTTPELT RRDPIGQTAG RGRDLWRKLR  360
APPVPSTSAN KGMPRHLLVA TLVLARTSRR LVFSFVPFPL RGVTSASRHG CVTSFTRAVC  420
CSGDGAGGPP VPARHLVERR AEVQVSTENG GDFPGAKAGG GRVVVVKSGN DETTNRDLAV  480
PGSRARGAKA STPLSPGATR HGWKPKRVLS GGVRCFHASP RLPSFVGRCG WRGPAPRHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24121365108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953828.11e-130protein ODORANT1
TrEMBLA0A3L6RR411e-129A0A3L6RR41_PANMI; Protein ODORANT1-like
STRINGSi020225m1e-130(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563