PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc01881.1.g00170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 605aa MW: 66936 Da PI: 4.7615 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.3 | 5.1e-52 | 9 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratk 79 lp GfrFhPtdeelv +yLk+k++g+ +++evi+e+d++k+ePwdLp k +++++ ew+fF+++d+ky++g+r+nrat+ Zmw_sc01881.1.g00170.1.sm.mk 9 LPLGFRFHPTDEELVRHYLKRKITGQISSEAEVIPEIDVCKCEPWDLPvKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATE 89 699************************9999*****************6346667888*********************** PP NAM 80 sgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +gyWkatgkd+ ++sk k++ +g+kktLvf+kgrapkge+ W+mheyr Zmw_sc01881.1.g00170.1.sm.mk 90 AGYWKATGKDRVIKSKgdkrKQHIIGMKKTLVFHKGRAPKGERMGWIMHEYRT 142 ***************987666666***************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-57 | 3 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.452 | 9 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.0E-28 | 10 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 605 aa Download sequence Send to blast |
MTVMELRALP LGFRFHPTDE ELVRHYLKRK ITGQISSEAE VIPEIDVCKC EPWDLPVKSL 60 IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIKSKGDKRK QHIIGMKKTL 120 VFHKGRAPKG ERMGWIMHEY RTTEPEFECG EQGGYVLYRL FRKQEEKTER SSPEEMDKSG 180 YSPTPSRSSP DNIEANEEAF TALNKESPES TIHDSPINLP NSVEAHDVSL TRWLADRNDN 240 VAANAVNVSQ MSLSGHINGI AKVDPSAGGL AQLVDSQKQH GDPNHFAANS GSILQHEENA 300 FLTDSQQGHM GFGGNGELPD DQAWWEGLSF DPDEPNPQLS GLYDNTPLLP YDTTDPDVLS 360 MGSGAESIHD LFNNMEDSSG KRDGWSTEPA TKETGITVMP RQSQPSVQQN YLYPHQGTAY 420 RRIRLQESFS LDVESGESAT NVDCKDEASC IEYLDLVVEE STAEKGEASD EDDAESTGIT 480 IRSRRPAPSS SATSSCIVTE YLDEAMEEST AEKGSSDEDD AESTGITIRN ALKAVPEAKS 540 VPRLRKTSEK NDDVTKQEDG VGSPVRAPGK KRGFPSHIVL LRGPGRQGAL SLNLVIQHVA 600 SFLFL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-45 | 8 | 164 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-45 | 8 | 164 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-45 | 8 | 164 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-45 | 8 | 164 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-45 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-45 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-45 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-45 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-45 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-45 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-45 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-45 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-45 | 8 | 164 | 16 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-45 | 8 | 164 | 16 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820792.1 | 0.0 | protein NTM1-like 9 | ||||
TrEMBL | A0A0A9CTY0 | 0.0 | A0A0A9CTY0_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Fb00405.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5172 | 38 | 59 |