PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01881.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 717aa MW: 78648.9 Da PI: 6.4208

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01881.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.1	1.3e-15	24	68	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+ E++++++a k++G W +I +++g ++t+ q++s+ qk+ Zmw_sc01881.1.g00130.1.am.mkhc 24 RERWTEAEHKRFLEALKLYGRQ-WQRIEEHVG-TKTAVQIRSHAQKF 68 78****************77.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.47E-16	18	74	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.824	19	73	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.2E-16	22	71	IPR006447	Myb domain, plants
SMART	SM00717	1.6E-12	23	71	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-8	24	64	IPR009057	Homeodomain-like
Pfam	PF00249	5.8E-13	24	67	IPR001005	SANT/Myb domain
CDD	cd00167	2.38E-9	26	69	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 717 aa Download sequence Send to blast
MEVNSSVEET VVKVRKPYTI TKQRERWTEA EHKRFLEALK LYGRQWQRIE EHVGTKTAVQ 60 IRSHAQKFFT KLEKEAMNNG TSPGQAHAID IPPPRPKRKP NSPYPRKNGL SSETSTKEVS 120 NDKSTKPNMR LSSGNLEMTN HSSLQRLQRK EVSEKGSCSE VLTLFQEVPS ASFSSVNKSS 180 SNHGAPSGIK QSNTEIRDMT TLGKNSLFID VHEDAKEIND REMEMLNGIH ISSKSDCPRE 240 DYLDASTNEI NLKSVSVETE YVDSQTAKTS HSGTEKNGAT SVLVTGTDGS HPDQTNDQEG 300 ANGRLNPCIH PTFSVDPKFN INATPLPCPH NYTAFPPMMQ CNCNQDANRS LINMSSTFSS 360 MLISTLLSNP AIHAAARLAA SYWPAAETNT SVDPNQVNPT EDAQGSNIDS PPSMASMVAA 420 TVAAASAWWA TQGLLPFFPP PMVFPFVPVP SAAFPTTDVR ASEKGRDCKV ENAQKECQGA 480 QHKEQTDALK VVAPSGSDGS RKGDVTHQTE LKISPVQNGD TTPTTVADAS DAFRNKKKQD 540 RSSCGSNTPS SSDVEADNVP EKQEKANDNA KQASCRNSSA GDTNNRRFRS SGSTSDSWKE 600 VSEEGRLAFD ALFSREKLPQ SFSPQEESNK ISKEEDDEVT TVKVDLNKNA TAIDHDLDTM 660 DESRSSFPNE LSQLKLKSRC TGFKPYKRCS VEAKDNRMPA SDDVGTKRIR LESEAST

Sequence ? help Back to Top

Protein Sequence Length: 717 aa Download sequence Send to blast

MEVNSSVEET VVKVRKPYTI TKQRERWTEA EHKRFLEALK LYGRQWQRIE EHVGTKTAVQ  60
IRSHAQKFFT KLEKEAMNNG TSPGQAHAID IPPPRPKRKP NSPYPRKNGL SSETSTKEVS  120
NDKSTKPNMR LSSGNLEMTN HSSLQRLQRK EVSEKGSCSE VLTLFQEVPS ASFSSVNKSS  180
SNHGAPSGIK QSNTEIRDMT TLGKNSLFID VHEDAKEIND REMEMLNGIH ISSKSDCPRE  240
DYLDASTNEI NLKSVSVETE YVDSQTAKTS HSGTEKNGAT SVLVTGTDGS HPDQTNDQEG  300
ANGRLNPCIH PTFSVDPKFN INATPLPCPH NYTAFPPMMQ CNCNQDANRS LINMSSTFSS  360
MLISTLLSNP AIHAAARLAA SYWPAAETNT SVDPNQVNPT EDAQGSNIDS PPSMASMVAA  420
TVAAASAWWA TQGLLPFFPP PMVFPFVPVP SAAFPTTDVR ASEKGRDCKV ENAQKECQGA  480
QHKEQTDALK VVAPSGSDGS RKGDVTHQTE LKISPVQNGD TTPTTVADAS DAFRNKKKQD  540
RSSCGSNTPS SSDVEADNVP EKQEKANDNA KQASCRNSSA GDTNNRRFRS SGSTSDSWKE  600
VSEEGRLAFD ALFSREKLPQ SFSPQEESNK ISKEEDDEVT TVKVDLNKNA TAIDHDLDTM  660
DESRSSFPNE LSQLKLKSRC TGFKPYKRCS VEAKDNRMPA SDDVGTKRIR LESEAST

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820794.1	0.0	protein LHY isoform X1
Refseq	XP_025820795.1	0.0	protein LHY isoform X1
TrEMBL	A0A2T8IF63	0.0	A0A2T8IF63_9POAL; Uncharacterized protein
STRING	Pavir.Fa01905.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6031	34	47