PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01874.1.g00130.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 408aa    MW: 46230.3 Da    PI: 5.8088
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01874.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.45.6e-34931832101
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+++++ed++++ ++sws+ gnsfvv+d++ f++ +Lp+ Fkhsnf+SFvRQLn+YgF+kv++++         weF+
  Zmw_sc01874.1.g00130.1.am.mk  93 FLSKTFDLVEDRSTDAVVSWSRAGNSFVVWDPHVFTEALLPRLFKHSNFSSFVRQLNTYGFRKVDSDR---------WEFA 164
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkk 101
                                   ++ F +g+++ll++ikr+k
  Zmw_sc01874.1.g00130.1.am.mk 165 NEGFLRGQRHLLKTIKRRK 183
                                   *****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-3789182IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.8E-3489182IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.9E-5889182IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-1893116IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3193182IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-18131143IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340132156IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-18144156IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MSAAAALRRF FPSRDSPTAF SPPRKCLAPS LGFAAKLSPE KYPRSSVWVL GCRAMDPAAP  60
GIVKEELLER EDVGGRDAPR PMEGLHEVGP PPFLSKTFDL VEDRSTDAVV SWSRAGNSFV  120
VWDPHVFTEA LLPRLFKHSN FSSFVRQLNT YGFRKVDSDR WEFANEGFLR GQRHLLKTIK  180
RRKPLATAPA SQQRTPVPAL CLEVGEFGFE KEIDRLKRDK NILITEVVEL RQEQQTTREH  240
VHAMEKRLRT AEQKQVQMMG FLARAMRNPE FFQQLVQQQD KRKELEDACS KKRRRPIDNA  300
PFYSPGETSQ SEQLDSPFLF DSGVLDGLTE PGMPELENLA VNIQELGKGS PDDGRMDQAS  360
GQPELNDDFW EELLIDDYGD KAGQPELQAR TEVADEIAQQ LGYLRSKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-247418210129Heat shock factor protein 1
5d5v_B3e-247418210129Heat shock factor protein 1
5d5v_D3e-247418210129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175181LKTIKRR
2280294KRKELEDACSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679240.10.0heat stress transcription factor A-2c isoform X2
SwissprotQ338B00.0HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLK4ABP70.0K4ABP7_SETIT; Uncharacterized protein
STRINGSi036304m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]