PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01857.1.g00180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 381aa MW: 41905.9 Da PI: 6.4539 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.5 | 1.1e-18 | 62 | 115 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+e Le F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k Zmw_sc01857.1.g00180.1.am.mk 62 KKRRLSDEQVEMLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHK 115 45589***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 113.3 | 1.6e-36 | 62 | 152 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 kkrrls+eqv++LE sF+ee+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+k+k lE+++ +Lk+a+da ++++Le+ Zmw_sc01857.1.g00180.1.am.mk 62 KKRRLSDEQVEMLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFVKLKQAHDAAILHKCHLEN 142 9******************************************************************************** PP HD-ZIP_I/II 83 eveeLreelk 92 ev +L+e+l+ Zmw_sc01857.1.g00180.1.am.mk 143 EVLRLKERLM 152 ******9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.471 | 57 | 117 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.9E-17 | 60 | 121 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.82E-16 | 61 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.75E-15 | 62 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-18 | 62 | 115 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.9E-16 | 62 | 115 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 2.6E-5 | 88 | 97 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 92 | 115 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.6E-5 | 97 | 113 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MEQYAEQQHQ LFPSSFVDLD SSLLAATGAA QGEERPRARR RRRRAARCGG ADGVEVDAED 60 PKKRRLSDEQ VEMLELSFRE ERKLETGRKV HLAAELGLDP KQVAVWFQNR RARHKSKLLE 120 EEFVKLKQAH DAAILHKCHL ENEVLRLKER LMVAEEELTR LRSAGSHAIS GDGVDVMGRV 180 VCSGSPSSSF SAGICHQQLG VGGVDDDLIY VPDVADYVHA DNTVVEWFSL FGLMEFYLGS 240 PCIRGRKRPS HELAFQFTSP WSIEANAPIE TAAPGSFVEE DITISDKVPG ASAATLARSD 300 TREHATRTAD LAVQATAGRA IDALNMGTAT SELIKPLEQR PRPSRRSHSP QPQAFLQQPD 360 KQQAITDATG DTNAAGGHAR S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 34 | 43 | RPRARRRRRR |
2 | 38 | 46 | RRRRRRAAR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460922.1 | 2e-93 | homeobox-leucine zipper protein HOX14 | ||||
Swissprot | Q7XI85 | 1e-83 | HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14 | ||||
TrEMBL | A0A1E5VQE4 | 2e-94 | A0A1E5VQE4_9POAL; Homeobox-leucine zipper protein HOX14 | ||||
STRING | MLOC_77488.1 | 8e-93 | (Hordeum vulgare) | ||||
STRING | Sb02g037560.1 | 8e-93 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 |
Publications ? help Back to Top | |||
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