PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01857.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 693aa    MW: 76462.3 Da    PI: 9.6471
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01857.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS435.53.8e-1333236921373
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   l+e L++cA+av++++  +++ ++ +l++++s +g+p++Rl ay++e+L arla s++++yk+l+++e +    s  l+++
  Zmw_sc01857.1.g00020.1.am.mk 323 LKEMLITCARAVEENNSFAINLMIPELRKMVSVSGEPLERLGAYMVEGLVARLAASGNSIYKSLKCKEPK---GSALLSYM 400
                                   5789*****************************************************************9...999***** PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160
                                   ++++e++P++kf+++ aN aI ea++ge+r+HiiDf i qG+QW++LlqaLa+Rp+gpp +RiTg++++ s   +   le 
  Zmw_sc01857.1.g00020.1.am.mk 401 SYLYEACPYFKFGYMSANGAIAEAIKGEDRIHIIDFHIAQGTQWLCLLQALAARPGGPPFVRITGIDDSFSAyaRGGGLEL 481
                                   ********************************************************************777688999**** PP

                          GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                                   +g+rL+++A+ ++vpfef+  va + +d+e+e+L + pgEa+aVn+ l+lh+++de vs++++rd++L+lvkslsPkv+++
  Zmw_sc01857.1.g00020.1.am.mk 482 VGKRLSHIAALCKVPFEFHG-VAISGNDIEVEHLGIVPGEAVAVNFTLELHHIPDEAVSTANHRDRILRLVKSLSPKVLTL 561
                                   ********************.6889******************************************************** PP

                          GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                                   veqe+++n+++F++rf+e+l+yy+a+f+s++  lpr+++eri++E+++l+reivn+vaceg+er+erhe ++kW++rl++a
  Zmw_sc01857.1.g00020.1.am.mk 562 VEQESNTNTAPFAQRFAETLHYYTAIFESIDLALPRDDRERINMEQHCLAREIVNLVACEGEERVERHELFGKWKSRLTMA 642
                                   ********************************************************************************* PP

                          GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                   GF+p pls  +++++k+ll++++ + y++ e++g l+lgWk+rpLv+ SaW
  Zmw_sc01857.1.g00020.1.am.mk 643 GFRPSPLSALVNDTIKTLLQTYSPN-YKLLERDGVLYLGWKNRPLVVSSAW 692
                                   ***********************55.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.116297674IPR005202Transcription factor GRAS
PfamPF035141.3E-130323692IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MSSTRTEKST ATAASGRDQS YVGFVWAFVR LRRHPRLGRF LFCPVVAVRK ETVRARVPCL  60
RVRAGQERLD TGARRGARAC SRHASRSHES GPRATRTPRA GRRHGYARDG TTRSTTPRTT  120
CLVSSTPSYR ALVALTSHAF TAPSSKAVRF LHGAASSSRK GPSRGARRRS GRARESVKHQ  180
LQSIAAVALL FYRARNDRRI VLGFACGRLF VWIDLCSALS CFCCSSCMRH DPPSNHSHPT  240
ESGSGSPLSQ EDSQSASTNG NGSPVSSVTE DPDDLKQKLK DLESAMLGTD SEIVNSLEVS  300
VANKLSLGHE EWVHMMSMPR GNLKEMLITC ARAVEENNSF AINLMIPELR KMVSVSGEPL  360
ERLGAYMVEG LVARLAASGN SIYKSLKCKE PKGSALLSYM SYLYEACPYF KFGYMSANGA  420
IAEAIKGEDR IHIIDFHIAQ GTQWLCLLQA LAARPGGPPF VRITGIDDSF SAYARGGGLE  480
LVGKRLSHIA ALCKVPFEFH GVAISGNDIE VEHLGIVPGE AVAVNFTLEL HHIPDEAVST  540
ANHRDRILRL VKSLSPKVLT LVEQESNTNT APFAQRFAET LHYYTAIFES IDLALPRDDR  600
ERINMEQHCL AREIVNLVAC EGEERVERHE LFGKWKSRLT MAGFRPSPLS ALVNDTIKTL  660
LQTYSPNYKL LERDGVLYLG WKNRPLVVSS AWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-633256926374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958142.10.0chitin-inducible gibberellin-responsive protein 2
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLK3ZS380.0K3ZS38_SETIT; Uncharacterized protein
STRINGSi029418m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]