PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01856.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

YABBY

Protein Properties

Length: 309aa MW: 34669.3 Da PI: 11.2388

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01856.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	110.8	2.5e-34	113	262	24	162
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaesh..ldeslkeelleelkveeenlksnv......ekeesastsv 96 v vP + l+ +vtv+CGhC +l ++l+ + + ++ + l+ e+ + + ++ + v ++ + + + Zmw_sc01856.1.g00080.1.am.mk 113 VGVPCKRLMDTVTVKCGHCNNLSYLSLRPPMVQPPSPTNhpLGPFQVERSTLNSTTHPYLFVAVVpsaapsWEKGHCNDCR 193 88******************98889888877776654113333333333333333333333220000002233333333 PP YABBY 97 ssekl...senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162 +++ l s + e r p v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknWa Zmw_sc01856.1.g00080.1.am.mk 194 RNQPLplpSPTSAEVGRRLPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 262 344446644444555555666********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.5E-38	113	263	IPR006780	YABBY protein
SuperFamily	SSF47095	2.49E-8	206	264	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.1E-5	217	264	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MCFSPSTTTF RRGIETLPHP LLEPGRPLSL FFYLPLPLPL RLTQFVTPPK KLAHQRLTHR 60 SAAVASAANH QAPSKHGFGD AVRAPVLRAL HLLQHRARGK LLERNRIRSG SRVGVPCKRL 120 MDTVTVKCGH CNNLSYLSLR PPMVQPPSPT NHPLGPFQVE RSTLNSTTHP YLFVAVVPSA 180 APSWEKGHCN DCRRNQPLPL PSPTSAEVGR RLPFVVKPPE KKHRLPSAYN RFMREEIQRI 240 KAAKPDIPHR EAFSMAAKNW AKCDPRCSTA VSTASSNNAP QPRLMLLQER AKEQVVESFD 300 IFKQIERSI

Functional Description ? help Back to Top
Source	Description
UniProt	Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269\|PubMed:14729915}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797472.1	1e-99	protein DROOPING LEAF isoform X1
Swissprot	Q76EJ0	9e-85	YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBL	A0A2T7CFS9	2e-98	A0A2T7CFS9_9POAL; Uncharacterized protein
TrEMBL	A0A2T8I5V1	2e-98	A0A2T8I5V1_9POAL; Uncharacterized protein
STRING	Pavir.Ia04690.1.p	2e-99	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5951	36	57