PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01855.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 210aa    MW: 23799.8 Da    PI: 5.6675
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01855.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-173683148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+ Ed +l++++k++G+g+W+++ r  g+ R++k+c++rw ++l
  Zmw_sc01855.1.g00050.1.sm.mk 36 KGPWTAAEDSILLEYIKKHGKGNWNAVQRNTGLSRCGKSCRLRWANHL 83
                                  79******************************************9996 PP
2Myb_DNA-binding52.61e-1689132146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   +g++T+eE+ l +++++++G++ W++ a +++ gRt++++k++w++
  Zmw_sc01855.1.g00050.1.sm.mk  89 KGAFTPEEENLVIQLHHKMGNK-WAKMATRLP-GRTDNEIKNFWNT 132
                                   799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.613183IPR017930Myb domain
SuperFamilySSF466891.16E-3033130IPR009057Homeodomain-like
SMARTSM007172.9E-153585IPR001005SANT/Myb domain
PfamPF002491.2E-153683IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-233790IPR009057Homeodomain-like
CDDcd001679.13E-123883No hitNo description
PROSITE profilePS5129425.4984138IPR017930Myb domain
SMARTSM007171.8E-1688136IPR001005SANT/Myb domain
PfamPF002493.6E-1689132IPR001005SANT/Myb domain
CDDcd001673.51E-1291132No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2591137IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MNRVKSADDC EMVLEDEMDL PPPAVVSPPS GPPQNKGPWT AAEDSILLEY IKKHGKGNWN  60
AVQRNTGLSR CGKSCRLRWA NHLRPNLKKG AFTPEEENLV IQLHHKMGNK WAKMATRLPG  120
RTDNEIKNFW NTRVKRSQSA SMVSCDQIPE LRYESGGSFH PENLMPDALF TENYTTDASV  180
FSDGVPMVLD DDMSSIWSNM LQTYEPLEYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-31111372127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970317.14e-71transcription factor GAMYB
SwissprotA2WW874e-68GAM1_ORYSI; Transcription factor GAMYB
TrEMBLK3XG871e-69K3XG87_SETIT; Transcription factor
STRINGSi000907m2e-70(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664