PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01853.1.g00110.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YC

Protein Properties

Length: 289aa MW: 31973.6 Da PI: 9.0478

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01853.1.g00110.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	166.7	3e-52	151	254	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksd 78 ql++fw++q i+ +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksd Zmw_sc01853.1.g00110.1.am.mk 151 QLQMFWAEQyreIDAVTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSD 231 89****9988999************************************************************** PP NF-YC 79 iaaavtrtdifdflvdivprdel 101 iaaav+rt++fdflvdivpr+e Zmw_sc01853.1.g00110.1.am.mk 232 IAAAVARTEVFDFLVDIVPREED 254 ******************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	21	No hit	No description
SuperFamily	SSF47113	1.29E-30	147	245	IPR009072	Histone-fold
Pfam	PF00808	4.0E-21	173	236	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.1E-36	174	251	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MGAEQVRKRK VFIWASVTMG CDRNGLARVR WAKLDFEFYL GQAQPTDQLV LMGRSRPFRR 60 PAVIFANGNP LNKIKTPPFF PSPRASSATP SNPPPSPPTS SPSPAYASET LAMDPKSTTP 120 PPPPHVMGAP VAXXXXVQQQ PHQQSAATQQ QLQMFWAEQY REIDAVTDFK NHNLPLARIK 180 KIMKADEDVR MIAAEAPVVF ARACEMFILE LTHRGWAHAE ENKRRTLQKS DIAAAVARTE 240 VFDFLVDIVP REEDKDAEAA AAAVGAGIPH PAAGMPTTDP MAYYYVQPQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-52	159	251	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	229	RRTLQKS

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3856	36	76