PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01841.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family BBR-BPC
Protein Properties Length: 286aa    MW: 31790 Da    PI: 9.8634
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01841.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind67.84.5e-21198187
                       GAGA_bind  1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaer 70
                                    md+ g+re  r+++ +y+        p++++k++ +++l+++++e+d++irer++al+ekkaa+aerdmaf+qrd+a+aer
  Zmw_sc01841.1.g00090.1.sm.mkhc  1 MDNLGHREngRQRPdQYKamhtewmmPQRQIKDHHSMNLLALMNEKDSAIRERDHALAEKKAAIAERDMAFAQRDAAMAER 81
                                    9999*99999****99*99****999889**************************************************** PP

                       GAGA_bind 71 nkalverdnkllalllv 87
                                    n+a+verdn+l+al+l+
  Zmw_sc01841.1.g00090.1.sm.mkhc 82 NAAIVERDNALAALELA 98
                                    ************99864 PP
2GAGA_bind286.31.3e-8797286119301
                       GAGA_bind 119 ledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader......skae 190
                                     l++s+++ ++e++++ea+pi+ a+ ++ + kk+ k++++++p+++ +   +k++++++k+   ++a e+      sk+e
  Zmw_sc01841.1.g00090.1.sm.mkhc  97 LAHSPYDhAKEMHISEAYPISAAPGSVGKGKKPTKNHSQASPLKRPSGVLRKTKKTNWKNGGLSGAGEDsarasaSKNE 175
                                     6788999899**************************************888888888888877766533466777**** PP

                       GAGA_bind 191 kksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklL 269
                                     +k++dl+ln+vs+Dest+P+P+CsCtG l+qCYkWGnGGWqS+CCt++iS+yPLPv+++rr+aR++grKmS+gaf+klL
  Zmw_sc01841.1.g00090.1.sm.mkhc 176 WKDQDLGLNQVSYDESTMPAPACSCTGELHQCYKWGNGGWQSSCCTMSISMYPLPVMPNRRHARMGGRKMSGGAFTKLL 254
                                     ******************************************************************************* PP

                       GAGA_bind 270 ekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                                     ++LaaeG+dls+pvDLk hWAkHGtn+++tir
  Zmw_sc01841.1.g00090.1.sm.mkhc 255 SRLAAEGHDLSTPVDLKYHWAKHGTNRYITIR 286
                                     *******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062175.9E-941286IPR010409GAGA-binding transcriptional activator
SMARTSM012268.4E-1501286IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDNLGHRENG RQRPDQYKAM HTEWMMPQRQ IKDHHSMNLL ALMNEKDSAI RERDHALAEK  60
KAAIAERDMA FAQRDAAMAE RNAAIVERDN ALAALELAHS PYDHAKEMHI SEAYPISAAP  120
GSVGKGKKPT KNHSQASPLK RPSGVLRKTK KTNWKNGGLS GAGEDSARAS ASKNEWKDQD  180
LGLNQVSYDE STMPAPACSC TGELHQCYKW GNGGWQSSCC TMSISMYPLP VMPNRRHARM  240
GGRKMSGGAF TKLLSRLAAE GHDLSTPVDL KYHWAKHGTN RYITIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964426.10.0barley B recombinant-like protein D
RefseqXP_004964427.10.0barley B recombinant-like protein D
SwissprotQ5VSA81e-180BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLA0A059Q1C60.0A0A059Q1C6_9POAL; Basic pentacysteine 6
STRINGPavir.Db02349.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]