PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01833.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRF
Protein Properties Length: 265aa    MW: 27709.8 Da    PI: 4.6457
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01833.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC64.31.8e-20183227145
                             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                     ++epgrCrRtDGKkWRC r +++++k+C+ H+hrgr+r  + ++e
  Zmw_sc01833.1.g00060.1.sm.mkhc 183 EPEPGRCRRTDGKKWRCCRSTIPNEKYCQGHMHRGRKRPVQLVVE 227
                                     69************************************9998875 PP
2QLQ47.74.7e-17118152337
                             QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                     F a+Qlq+L++Q  +y+y+aa++PvP +L+++i+k
  Zmw_sc01833.1.g00060.1.sm.mkhc 118 FAAMQLQELEQQSKVYQYMAARVPVPTHLVFPIWK 152
                                     889******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.1E-6116152IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.983117152IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.0E-10118151IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166720.829183227IPR014977WRC domain
PfamPF088794.1E-18184222IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAAEREAMNR VGGGGGGNDY PQEAAPAAAE EAAQAAVAQG AGHEPAEEMA NREGANGYGA  60
GAGAGAGEDD DTCRDLVLIE DPEAVAVEDP EEAAAAAALQ EEMKALKASI PDGAGAVFAA  120
MQLQELEQQS KVYQYMAARV PVPTHLVFPI WKSVTGASSE GAQKYPTLMG LATLCLDFGK  180
DPEPEPGRCR RTDGKKWRCC RSTIPNEKYC QGHMHRGRKR PVQLVVEDDE PDSASGSKTT  240
PGKADDKNAS NKKLTVAAPA AVKSS
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957654.11e-132growth-regulating factor 11
SwissprotA5HEG91e-129GRF10_MAIZE; GRF-interacting factor 10
TrEMBLK3ZW281e-130K3ZW28_SETIT; Uncharacterized protein
STRINGSi030809m1e-131(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67353152
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]
  3. Zhang D, et al.
    GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize.
    Plant Cell, 2018. 30(2): p. 360-374
    [PMID:29437990]