PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01828.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 493aa    MW: 52262.5 Da    PI: 8.1265
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01828.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.81.5e-09821281455
                           AP2  14 rWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   r++A+++d  ++n    k+ k+++lg +  +e Aa+a++ a++k++g
  Zmw_sc01828.1.g00090.1.am.mk  82 RFEAHLWDkGTWNPtqkKKgKQVYLGAYNEEEAAARAYDLAALKYWG 128
                                   78999999877744555447*************************98 PP
2AP251.91.8e-16171222155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Zmw_sc01828.1.g00090.1.am.mk 171 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 222
                                   89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.63576136IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1376137IPR016177DNA-binding domain
SMARTSM003805.0E-1776142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-1276136IPR001471AP2/ERF domain
PfamPF008473.6E-681128IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18171232IPR016177DNA-binding domain
CDDcd000188.28E-24171232No hitNo description
PfamPF008476.7E-12171222IPR001471AP2/ERF domain
PROSITE profilePS5103218.953172230IPR001471AP2/ERF domain
SMARTSM003801.6E-26172236IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-18172231IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
METYSLLVKD ELNGIGGGGG RGALYCTAAP RGGGGDGPMK SVKRRKREPS TAAVGKELAG  60
GDKSGSGGNA AKRSSRFRGV SRFEAHLWDK GTWNPTQKKK GKQVYLGAYN EEEAAARAYD  120
LAALKYWGPS TYTNFPVVDY EKELKVMQNV SKEEYLASIR RKSNGFSRGV SKYRGVARHH  180
HNGRWEARIG RVFGNKYLYL GTYSTQEEAA RAYDIAAIEY RGINAVTNFD LSSYIRWLKP  240
AGAGAVEDGN SGGTPTSGVK PAILPSLCLQ GVHQAAGSLL QHTHGAAAML QGGSLAGLDD  300
VGSAYASGPR LTAVCGRPTG ALAGLDDVSS VYTGGPSPTA VCGRPSPSSS ATALSLLLRS  360
SMFQELVARN ADAAAQAEQL PAAAEVEHVT ASDVEADTKP ALEEPPTGET GDALYDAGAD  420
DAFACSMYEL DDSFACMQQS FWNYCLYVPN GPFLRSDKVD GPSVSRVPHA AQSMAKSCNC  480
VVWRLGLEIT SRP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13945KSVKRRK
294102PTQKKKGKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681620.10.0AP2-like ethylene-responsive transcription factor AIL5
TrEMBLK3Y0Z50.0K3Y0Z5_SETIT; Uncharacterized protein
STRINGSi007857m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473