PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01821.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARF
Protein Properties Length: 697aa    MW: 75865.5 Da    PI: 7.3757
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01821.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.4e-17155255199
                                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                                   f k+lt++d     ++ +p   ae++      +  k +++tl+ +d +g  W+++++yrk++ r+ l++GW+ Fv+ ++L 
  Zmw_sc01821.1.g00010.1.am.mk 155 FAKTLTQPDIAYP-WFLVPEYIAETIfpplnyD-AKLSEQTLVAKDVHGTAWKFQHSYRKRPLRHQLATGWSTFVRNKRLF 233
                                   5666655555554.5777888888888888752.3446679**************************************** PP

                                   TT-EEEEEE-SSSEE..EEEEE-S CS
                            B3  76 egDfvvFkldgrsefelvvkvfrk 99 
                                   +gD++vF   + +++ l+++++r+
  Zmw_sc01821.1.g00010.1.am.mk 234 TGDSIVFL--RGDGGDLHIGIRRA 255
                                   ********..3488999****996 PP
2Auxin_resp74.33.4e-25277345168
                    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsd 68 
                                   aa+ as +++Fev ++P    +eF+v+++ v +a++v++s+GmRfkmafet+dss++ + +Gtv+gv+ 
  Zmw_sc01821.1.g00010.1.am.mk 277 AARLASAGQPFEVAFYPCLNMPEFCVRAKVVDEAMRVPWSPGMRFKMAFETDDSSQIIWfTGTVTGVKS 345
                                   68899**************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.1E-27149256IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-20152256IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.856154256IPR003340B3 DNA binding domain
CDDcd100179.30E-15154254No hitNo description
SMARTSM010196.3E-11155256IPR003340B3 DNA binding domain
PfamPF023623.9E-14156255IPR003340B3 DNA binding domain
PfamPF065077.9E-21277345IPR010525Auxin response factor
PROSITE profilePS5174512.395580656IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MASGSLPMIT AGDQQAPAAG AERCVDRHLW LACAGRMCTV PPVGDIVYYF PQGHAEHAGG  60
PAGLFSATVD LSAARVLVHV LCRVTAVRYM ADPETDEVFA RILLIPLPDG VMGAGLDDDA  120
AVFARILLIP LPDGVMGAGL DDDAAVDETK KPASFAKTLT QPDIAYPWFL VPEYIAETIF  180
PPLNYDAKLS EQTLVAKDVH GTAWKFQHSY RKRPLRHQLA TGWSTFVRNK RLFTGDSIVF  240
LRGDGGDLHI GIRRAKSEFC GAGMGRAKVM AEDLVEAARL ASAGQPFEVA FYPCLNMPEF  300
CVRAKVVDEA MRVPWSPGMR FKMAFETDDS SQIIWFTGTV TGVKSLWRLL EVTWDRPERL  360
RNVKRVSPWL VEVVSSMPDP SFLPPRKKPR SVHPEFPFDG QLLNSAFPPN PLPHSQPPRP  420
YFLNTYPSLF PFPSGSAPAA MQGARHAQSV PSLPDYLTNL PSSLLYPGSH RPTTIPEPAI  480
INTGLTIGAN NKKPEKPAGI RLFGQIIQTE EQMSLGSSSG ATSPAATTTS SLNWNAEKGA  540
NVSACSGSGV IQNSSRDKAS SERQWSGDGS SHLSDLGLGP GQCEVFMESD TVGRNLDLSS  600
LTSFDEFYHR LSEMFGIESA ALRSRVIYRN ATGAVKHIGD GSFRSARRLT ILTDAGAGRE  660
NLVLPGYRRR SANAWPQLQP IPMIVACLPP PDDELKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-532737621357Auxin response factor 1
4ldy_B2e-532737621357Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1384390PRKKPRS
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953169.10.0auxin response factor 8
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLA0A368PP630.0A0A368PP63_SETIT; Auxin response factor
TrEMBLK3YQG60.0K3YQG6_SETIT; Auxin response factor
STRINGSi016509m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152