PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01819.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 1582aa MW: 172138 Da PI: 6.371

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01819.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.6	3.4e-09	756	798	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE e++ + +++G++ +++I++ + ++t +c+++++k+ Zmw_sc01819.1.g00050.1.sm.mkhc 756 PWTQEEKEIFMETLAKFGKD-FSKISSFIT-HKTTADCVEFYYKH 798 8***************99.****9.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.65E-15	740	801	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-7	747	801	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.886	752	803	IPR017884	SANT domain
SMART	SM00717	1.8E-8	753	801	IPR001005	SANT/Myb domain
Pfam	PF00249	2.8E-7	755	798	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	12.666	960	1011	IPR017884	SANT domain
SMART	SM00717	1.3E-6	961	1009	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-4	964	1006	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.9E-9	964	1011	IPR009057	Homeodomain-like
CDD	cd00167	6.13E-5	965	1003	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1582 aa Download sequence Send to blast
MRDHARPSPR RAPSSVSIGT PAPRKSSDLR PLPPPPPSPA PLISPNPSAV SESYYRQGGG 60 AYDRPYPDEM PLGYTPSRSD RYWMDDEGGG YKGFSRYGGG RRDGRDMRGS YRRSPFRSYG 120 NDFSRNHQEQ PPPPPPRRSP LRSVALPIYD PPGNRVDRGD RDSLPRVTPW RRRENRSEAA 180 GAAGAGHVSA GQSALLAASG NEVSAHPPAV TSPHGAEEAP RKKARLGWGQ GLAKYEKQKV 240 QGPTDPSEDV ALGSPAESSF SCTCSCAMHI DDCCATISTS AMCIPSCGAA TSTSTMRIPG 300 FCTITSIYGM CISGFCSGTC TSRMYISSSS TITSICGTTC TSTMCICDTT CTCTSMCISA 360 PEVKSCDLTA NTVLNSTQDT PGADDQACNN EFPIKIDQLG DDRIDSLATL LAKFLEHDSC 420 HGDSKDPSST SKLLLLKESI SKEIEKTELE IDSLEGELKS VNTVAPEDSP TGVTYTENIS 480 PPSGTSKVPG CDKSHVKEPR ELSPFPKIPI VQDANVKDAE NMDIETAPVH NAKTASEESA 540 ACPENQAQAA ADVGPVNVSG GAGPQIDVDN ERLEVSSCHI DTDSVKADGG VDLRGRQCLY 600 PNHDLLSSVT SSNHDIAKEA NESVFKCLSG DTPRLDLLDT SHVSIERKNV SFIKEKLMLR 660 KSRLSFKEQA LTFKFRVLRY LWKEDMRAQS LVSALIKPAG HHILDLRDNV KRRRNYFKMP 720 ALIINEKEKE CSRFLSKNGL IEDPVAVEKE RVMINPWTQE EKEIFMETLA KFGKDFSKIS 780 SFITHKTTAD CVEFYYKHHK SDSFREVKKL LDQHQQQQPT STFLGAKSGK KWNREANAAS 840 LDILGIASAV AAQGLEYEKR VEKFSAKSLI RNVSNVSFVA RKSSRECFDN TSLHERESVA 900 ADVLAGICGT LSPEGMSSCI TSSADPGQKI NITRMENALT LEISKNVDDE DTLSDIECEV 960 DPVDWNDDEK QIFIEAMNNY GKDFARISSC VKSKSYEQCK VFFSKARKSL GLDLIHQGAA 1020 DINMPTSDTN GGRSDTDEAC AAEMDSAICS TQSFAKTEMD VCPTERAVQG PSSCVISKQT 1080 EGDGSNDCNV LDVNTECENK ADKTCDDQKR FNEVAHQSQC GPIDINCPET PEKLEVTADT 1140 VDQMNMHNSS AVISSKDQPE ARMDGCSHPA LDNALVKAGT ADPSASMVAE SGIKENIHHF 1200 SNPPSTSSYQ HSVPRDKPPS KPKPQVTPLT PKDLMPVQFS SVLPDPTSIR FEGIASITTP 1260 NFEDTGNRAC NALEAKDMNK YPAFKEQSQA GQHDLLFHNI DGYKKHLATE ASIFSERNTC 1320 GTVSTSQSDR FTVTKFQNGR SNSLGGLPNT KGIHWDREHN EVSDGSLRHC SHNTSSDSNE 1380 QIKRLGDVKL FGQILSHQSS QNSGSSCNGS KNKPSLPNVD TSSMRLLNSP RDHVSCSPRP 1440 VATGHLGLDN RSVRTYGHLD GSTTQPEPLP TMAKCQTSLS GVPFYSAKNG TRGMFSGYQQ 1500 PLMQAHQSDP KLLERYSDPH KRNGMEFISG FQQQPGKVSL FGGAGVLVSG VSDPVAALKA 1560 QYGPGSKITS CDVDPWKDIG SR

Sequence ? help Back to Top

Protein Sequence Length: 1582 aa Download sequence Send to blast

MRDHARPSPR RAPSSVSIGT PAPRKSSDLR PLPPPPPSPA PLISPNPSAV SESYYRQGGG  60
AYDRPYPDEM PLGYTPSRSD RYWMDDEGGG YKGFSRYGGG RRDGRDMRGS YRRSPFRSYG  120
NDFSRNHQEQ PPPPPPRRSP LRSVALPIYD PPGNRVDRGD RDSLPRVTPW RRRENRSEAA  180
GAAGAGHVSA GQSALLAASG NEVSAHPPAV TSPHGAEEAP RKKARLGWGQ GLAKYEKQKV  240
QGPTDPSEDV ALGSPAESSF SCTCSCAMHI DDCCATISTS AMCIPSCGAA TSTSTMRIPG  300
FCTITSIYGM CISGFCSGTC TSRMYISSSS TITSICGTTC TSTMCICDTT CTCTSMCISA  360
PEVKSCDLTA NTVLNSTQDT PGADDQACNN EFPIKIDQLG DDRIDSLATL LAKFLEHDSC  420
HGDSKDPSST SKLLLLKESI SKEIEKTELE IDSLEGELKS VNTVAPEDSP TGVTYTENIS  480
PPSGTSKVPG CDKSHVKEPR ELSPFPKIPI VQDANVKDAE NMDIETAPVH NAKTASEESA  540
ACPENQAQAA ADVGPVNVSG GAGPQIDVDN ERLEVSSCHI DTDSVKADGG VDLRGRQCLY  600
PNHDLLSSVT SSNHDIAKEA NESVFKCLSG DTPRLDLLDT SHVSIERKNV SFIKEKLMLR  660
KSRLSFKEQA LTFKFRVLRY LWKEDMRAQS LVSALIKPAG HHILDLRDNV KRRRNYFKMP  720
ALIINEKEKE CSRFLSKNGL IEDPVAVEKE RVMINPWTQE EKEIFMETLA KFGKDFSKIS  780
SFITHKTTAD CVEFYYKHHK SDSFREVKKL LDQHQQQQPT STFLGAKSGK KWNREANAAS  840
LDILGIASAV AAQGLEYEKR VEKFSAKSLI RNVSNVSFVA RKSSRECFDN TSLHERESVA  900
ADVLAGICGT LSPEGMSSCI TSSADPGQKI NITRMENALT LEISKNVDDE DTLSDIECEV  960
DPVDWNDDEK QIFIEAMNNY GKDFARISSC VKSKSYEQCK VFFSKARKSL GLDLIHQGAA  1020
DINMPTSDTN GGRSDTDEAC AAEMDSAICS TQSFAKTEMD VCPTERAVQG PSSCVISKQT  1080
EGDGSNDCNV LDVNTECENK ADKTCDDQKR FNEVAHQSQC GPIDINCPET PEKLEVTADT  1140
VDQMNMHNSS AVISSKDQPE ARMDGCSHPA LDNALVKAGT ADPSASMVAE SGIKENIHHF  1200
SNPPSTSSYQ HSVPRDKPPS KPKPQVTPLT PKDLMPVQFS SVLPDPTSIR FEGIASITTP  1260
NFEDTGNRAC NALEAKDMNK YPAFKEQSQA GQHDLLFHNI DGYKKHLATE ASIFSERNTC  1320
GTVSTSQSDR FTVTKFQNGR SNSLGGLPNT KGIHWDREHN EVSDGSLRHC SHNTSSDSNE  1380
QIKRLGDVKL FGQILSHQSS QNSGSSCNGS KNKPSLPNVD TSSMRLLNSP RDHVSCSPRP  1440
VATGHLGLDN RSVRTYGHLD GSTTQPEPLP TMAKCQTSLS GVPFYSAKNG TRGMFSGYQQ  1500
PLMQAHQSDP KLLERYSDPH KRNGMEFISG FQQQPGKVSL FGGAGVLVSG VSDPVAALKA  1560
QYGPGSKITS CDVDPWKDIG SR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	4e-14	719	805	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	4e-14	719	805	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960366.1	0.0	uncharacterized protein LOC101781442 isoform X1
Refseq	XP_004960367.1	0.0	uncharacterized protein LOC101781442 isoform X1
Refseq	XP_012700232.1	0.0	uncharacterized protein LOC101781442 isoform X1
TrEMBL	A0A368QBV9	0.0	A0A368QBV9_SETIT; Uncharacterized protein
STRING	Si020953m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6299	35	49