PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01817.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 249aa MW: 27848.2 Da PI: 11.0159

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01817.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	22.9	1.2e-07	165	179	21	35
GATA 21 tLCnaCGlyyrkkgl 35 +LCnaCG++yrkk++ Zmw_sc01817.1.g00050.1.am.mk 165 SLCNACGIRYRKKRR 179 6***********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.50.10	3.1E-4	164	180	IPR013088	Zinc finger, NHR/GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MISFSDDDGT CRSKSEFTHK QSFHRRSETP RRLFSLPSAK APLRPHLRQN PFFRSSLSLS 60 LPHLPRSYSL RSLYYTLRVT EKPAGGRTKK RSSGRRSRAA DRSSGATAAD GVRRSQDRWD 120 RGAGGREEEL RGMPRHHDAH VAERADGTQG EFTIGLPGLL LDRASLCNAC GIRYRKKRRQ 180 DLGLDQKQVQ QQHQGEIKTE VKESNSNSSS GSSNNLEVVQ ERKLLMGVEE AAFLLMTLSS 240 SSTSTLLHG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6721	28	54