PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01816.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 364aa MW: 40159.2 Da PI: 6.0605

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01816.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.3	1.3e-52	3	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhPtd+elv +yLk+kv++ k+el evi+ +d+yk+ePw+Lp k + +++ ew+fF++rd+ky++g+r+nrat+ Zmw_sc01816.1.g00100.1.am.mk 3 LPPGFRFHPTDDELVGYYLKRKVDNLKIEL-EVIPVIDLYKSEPWELPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATN 82 79**************************.99**********95334445667******************* PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +gyWkatgkd+++ + +g + g++ktLvfy+grap ge+tdWvmheyrl Zmw_sc01816.1.g00100.1.am.mk 83 TGYWKATGKDRRIAC-DGGVYGVRKTLVFYRGRAPGGERTDWVMHEYRL 130 ***********.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-58	2	166	IPR003441	NAC domain
PROSITE profile	PS51005	56.074	3	167	IPR003441	NAC domain
Pfam	PF02365	4.5E-29	4	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MTLPPGFRFH PTDDELVGYY LKRKVDNLKI ELEVIPVIDL YKSEPWELPE KSFLPKRDLE 60 WFFFCPRDRK YPNGSRTNRA TNTGYWKATG KDRRIACDGG VYGVRKTLVF YRGRAPGGER 120 TDWVMHEYRL CQDLVHGASN FIVRPSSTTG PFITFQGGYA LCRVIKRHEA GLLQCELPAR 180 AKGASTAGGA RGGQMTKVPS NSSLVSSDQL STFTSANSGS PPLDMRRGMC TVAESCNNFQ 240 NSLAYGGDSC DMAGTCATNG LPPPLFAPSD TSSQMCAPPH DLFFIGDDLP AAESRLSAGR 300 EYFFGDETGS VSERELKWDD FPIPTATANT FPTTTATDML CRQASDGVDD LAAFFFSDEN 360 RVVF

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MTLPPGFRFH PTDDELVGYY LKRKVDNLKI ELEVIPVIDL YKSEPWELPE KSFLPKRDLE  60
WFFFCPRDRK YPNGSRTNRA TNTGYWKATG KDRRIACDGG VYGVRKTLVF YRGRAPGGER  120
TDWVMHEYRL CQDLVHGASN FIVRPSSTTG PFITFQGGYA LCRVIKRHEA GLLQCELPAR  180
AKGASTAGGA RGGQMTKVPS NSSLVSSDQL STFTSANSGS PPLDMRRGMC TVAESCNNFQ  240
NSLAYGGDSC DMAGTCATNG LPPPLFAPSD TSSQMCAPPH DLFFIGDDLP AAESRLSAGR  300
EYFFGDETGS VSERELKWDD FPIPTATANT FPTTTATDML CRQASDGVDD LAAFFFSDEN  360
RVVF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-50	1	130	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792378.1	1e-155	NAC domain-containing protein 71-like
TrEMBL	A0A2T7C9T3	1e-154	A0A2T7C9T3_9POAL; Uncharacterized protein
STRING	Pavir.Ia03491.1.p	1e-156	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6209	38	54