PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc01805.1.g00230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 235aa MW: 25988 Da PI: 5.1156 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.3 | 2.6e-18 | 61 | 114 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq + Le F+++r++ + ++ +LA++lgL+ +qV +WFqNrRa++k Zmw_sc01805.1.g00230.1.am.mkhc 61 KKRRLSDEQARFLEMRFREERKLETPRKVQLAAELGLDAKQVAIWFQNRRARHK 114 56689***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 109.9 | 1.8e-35 | 61 | 152 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 kkrrls+eq+++LE+ F+ee+kLe+ rKv+la eLgl+++qva+WFqnrRAR+k+k +E+++++L++a+da + +n++L Zmw_sc01805.1.g00230.1.am.mkhc 61 KKRRLSDEQARFLEMRFREERKLETPRKVQLAAELGLDAKQVAIWFQNRRARHKSKLMEEEFAKLRAAHDAAVLQNCHL 139 9****************************************************************************** PP HD-ZIP_I/II 81 ekeveeLreelke 93 e+e +L+++l+e Zmw_sc01805.1.g00230.1.am.mkhc 140 ETELLKLKDRLAE 152 ********99976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.844 | 56 | 116 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-15 | 59 | 120 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.74E-16 | 60 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.51E-14 | 61 | 116 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-16 | 61 | 114 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 8.1E-16 | 61 | 114 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 4.6E-6 | 87 | 96 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 91 | 114 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.6E-6 | 96 | 112 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 235 aa Download sequence Send to blast |
MGGEAEERLL FPSFAFVDPA ESFAEAVDTS GSGGEQKKAR QRRRQKSKPV ADGEPGDEQA 60 KKRRLSDEQA RFLEMRFREE RKLETPRKVQ LAAELGLDAK QVAIWFQNRR ARHKSKLMEE 120 EFAKLRAAHD AAVLQNCHLE TELLKLKDRL AEAEEEKDKL IAAAAAATTG GGAGSSSPSS 180 SSFSTVTCNP AALVGQFRVE DEAADFSYMG QYAYNEYMMD FAAGYFGGVA DDQFN |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 41 | 63 | RRRQKSKPVADGEPGDEQAKKRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985327.1 | 1e-100 | homeobox-leucine zipper protein HOX12 | ||||
Swissprot | A2XDK5 | 3e-82 | HOX12_ORYSI; Homeobox-leucine zipper protein HOX12 | ||||
Swissprot | Q10QF2 | 3e-82 | HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12 | ||||
TrEMBL | K4AEE8 | 3e-99 | K4AEE8_SETIT; Uncharacterized protein | ||||
STRING | Si037255m | 1e-100 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 |
Publications ? help Back to Top | |||
---|---|---|---|
|