PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01800.1.g00170.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 274aa MW: 29075.6 Da PI: 7.9552

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01800.1.g00170.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	94.6	2e-29	50	147	3	103
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+ +a+++i++l+ ++++++++ ++ + + Zmw_sc01800.1.g00170.1.am.mk 50 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIDAAQHEIDKLPPLQFPPQHA---QDLVAHLQ 127 78*************************************************************9999933...34444444 PP TCP 84 nsssgkaaksaakskksqks 103 ss+ + +s+a ++ + Zmw_sc01800.1.g00170.1.am.mk 128 PSSILAPFTSTAAADSAATA 147 44444333333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.0E-26	51	122	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	29.402	51	109	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MISGNHTNEE LASCRKAEQP AGAGKSAVAS SRHWPPSTES RIVRVSRVFG GKDRHSKVRT 60 VKGLRDRRVR LSVPTAIQLY DLQDRLGLSQ PSKVVDWLID AAQHEIDKLP PLQFPPQHAQ 120 DLVAHLQPSS ILAPFTSTAA ADSAATAASS MLDGDKGGGI KGLMGLNNSV SLVNGAMPLA 180 HGLYFAGESW TNGVSVHDQV SHGNSPQPTV AHHSPFSSLL SLAPGPQLVF YSPEGGGFAM 240 KEAQDQFPVD NLEHSQGQLS LSSARSFLHS GSQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-20	56	110	1	55	Putative transcription factor PCF6
5zkt_B	2e-20	56	110	1	55	Putative transcription factor PCF6
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961521.1	1e-146	transcription factor TCP13 isoform X1
Refseq	XP_004961522.1	1e-146	transcription factor TCP13 isoform X1
Refseq	XP_012700333.1	1e-146	transcription factor TCP13 isoform X1
TrEMBL	K3Z8G3	1e-144	K3Z8G3_SETIT; Uncharacterized protein
STRING	Si022830m	1e-145	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2490	35	84