PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01784.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 393aa MW: 42854.2 Da PI: 8.4036

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01784.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.2e-16	119	177	1	46
TSSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 +g+W++eEd +l++ ++++G+g W+ Ia+ ++ gRt++++k++w++ Zmw_sc01784.1.g00060.1.am.mk 119 KGPWSPEEDAKLKEFIEKHGTGgnwialpqkagmhdPWSIIASQLP-GRTDNDIKNYWNT 177 79******************************************.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.56E-14	105	183	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.2E-23	110	183	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.089	114	183	IPR017930	Myb domain
SMART	SM00717	1.2E-16	118	181	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-14	119	177	IPR001005	SANT/Myb domain
CDD	cd00167	1.00E-12	121	179	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MDGCGDVSRR KQRGICMWLD EERFQRETQG IMLAAGVNSA SLIIGRVYQK RLLQPAVSSR 60 RSISLQRAAT YSPACPPTNT GQLMFDAQAG LSSGLRAGRS FCCDLMGRAP CCDKNNVKKG 120 PWSPEEDAKL KEFIEKHGTG GNWIALPQKA GMHDPWSIIA SQLPGRTDND IKNYWNTKLK 180 KKLLGSSSMT APPQRAPRQH HRPLNLMLQN TSSSLSQLTY SGFFPETAGS LHDSIIPALT 240 LPPPQDFMLS SSLAIPNASS LLHAHGGTQQ QLLHQHVVKE ESGSMIVFGS DQQSCSSSDV 300 GARSRPQFSH GKELSFDGYY GYSLNGSIGN HDHGSLLQLQ EHHQQAQVPV EYSYDAIKQL 360 LMSSNGNNLH GGGQDHDDGG MEGFGAQGKV TIR

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MDGCGDVSRR KQRGICMWLD EERFQRETQG IMLAAGVNSA SLIIGRVYQK RLLQPAVSSR  60
RSISLQRAAT YSPACPPTNT GQLMFDAQAG LSSGLRAGRS FCCDLMGRAP CCDKNNVKKG  120
PWSPEEDAKL KEFIEKHGTG GNWIALPQKA GMHDPWSIIA SQLPGRTDND IKNYWNTKLK  180
KKLLGSSSMT APPQRAPRQH HRPLNLMLQN TSSSLSQLTY SGFFPETAGS LHDSIIPALT  240
LPPPQDFMLS SSLAIPNASS LLHAHGGTQQ QLLHQHVVKE ESGSMIVFGS DQQSCSSSDV  300
GARSRPQFSH GKELSFDGYY GYSLNGSIGN HDHGSLLQLQ EHHQQAQVPV EYSYDAIKQL  360
LMSSNGNNLH GGGQDHDDGG MEGFGAQGKV TIR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975125.1	1e-133	transcription factor RAX2
TrEMBL	A0A3L6Q925	1e-136	A0A3L6Q925_PANMI; Transcription factor RAX2-like
STRING	Si010627m	1e-133	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP135	38	412