PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01778.1.g00230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 327aa MW: 35803.9 Da PI: 5.8086 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.8 | 3.7e-11 | 16 | 86 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......................TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.......................kgRtlkqcksrwqkyl 48 +g W++eEde+l++ + +G g+W+++++ g + R++k+c++rw +yl Zmw_sc01778.1.g00230.1.am.mk 16 KGLWSPEEDEKLYNHIISHGVGCWSSVPKLAGnarngrhrrprlieadvcleragLQRCGKSCRLRWINYL 86 678*******************8888888888888888888888888888*******************97 PP | |||||||
2 | Myb_DNA-binding | 47.5 | 4e-15 | 92 | 135 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+ l+v +++ lG++ W+ Ia++++ gRt++++k++w++ Zmw_sc01778.1.g00230.1.am.mk 92 RGGFSQQEEGLIVALHEILGNR-WSQIASHLP-GRTDNEIKNFWNS 135 7889******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.632 | 11 | 59 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-21 | 11 | 89 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.41E-23 | 13 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.2E-9 | 15 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-10 | 16 | 86 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.25E-8 | 19 | 86 | No hit | No description |
PROSITE profile | PS51294 | 23.748 | 87 | 141 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-25 | 90 | 141 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-14 | 91 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-13 | 92 | 136 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.31E-10 | 95 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MGRLSGGGGV QPKLRKGLWS PEEDEKLYNH IISHGVGCWS SVPKLAGNAR NGRHRRPRLI 60 EADVCLERAG LQRCGKSCRL RWINYLRPDL KRGGFSQQEE GLIVALHEIL GNRWSQIASH 120 LPGRTDNEIK NFWNSCLKKK LRQRGIDPST HKPISGGADA AAALPEDQDR KPVAVDAGPA 180 QKQPAVFDPF PATDFGFDLA NVSAFYGQYD DAKASDDAVG LAVDYCSVLD VSVSENLGYG 240 ESSSNSSNWN CAEMSNVLDG DALDWASGGG GCAKAEPFTE MERRCHSGGW RVEVDDDALE 300 LEHKFAALPG SCHEQSLAHF DFNLEYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-24 | 10 | 141 | 21 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 142 | LKKKLRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961344.1 | 1e-142 | myb-related protein Hv33 | ||||
Swissprot | P20027 | 1e-104 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | A0A3L6SV81 | 1e-141 | A0A3L6SV81_PANMI; Myb-related protein Hv33-like | ||||
STRING | Pavir.J19191.1.p | 1e-147 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 |