PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc01777.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 125aa MW: 13467.5 Da PI: 4.6043 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 42 | 2e-13 | 16 | 42 | 30 | 56 |
G2-like 30 ktilelmkvkgLtlehvkSHLQkYRla 56 ++i+elmkv+gLt+++vkSHLQkYRl+ Zmw_sc01777.1.g00090.1.sm.mk 16 RAIRELMKVDGLTNDEVKSHLQKYRLH 42 689**********************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.2E-5 | 12 | 45 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-12 | 14 | 45 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.7E-11 | 16 | 42 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 125 aa Download sequence Send to blast |
MGPAVRTDDV QALAARAIRE LMKVDGLTND EVKSHLQKYR LHTRRSSSSD GTVDGQAATT 60 LWSGPEEQQQ QYTTSQHSTS QSGSPHGPLQ LTVSSRAVSV TAGGDSCYDD GDEEEDEKAE 120 SRSSI |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809801.1 | 3e-37 | transcription factor NIGTH1-like | ||||
TrEMBL | A0A1E5VCU6 | 5e-41 | A0A1E5VCU6_9POAL; Myb family transcription factor EFM | ||||
STRING | Pavir.Ca02525.1.p | 2e-38 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5582 | 33 | 53 |