PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01760.1.g00200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 338aa MW: 36671.7 Da PI: 8.0329 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.1 | 1.1e-19 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt+Ed+llv+ v+q+G g+W++++++ g++R++k+c++rw +yl Zmw_sc01760.1.g00200.1.am.mk 18 KGPWTTQEDKLLVEHVQQHGEGRWNSVSKHTGLKRSGKSCRLRWVNYL 65 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.9 | 4.3e-17 | 71 | 115 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++ Zmw_sc01760.1.g00200.1.am.mk 71 RGKITPQEESIIVQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 115 8999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.614 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.01E-29 | 16 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-17 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-18 | 18 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-24 | 19 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.44E-12 | 20 | 65 | No hit | No description |
PROSITE profile | PS51294 | 25.396 | 66 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-16 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 71 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-24 | 73 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.78E-10 | 75 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MEEGQLAWGG REVDGWRKGP WTTQEDKLLV EHVQQHGEGR WNSVSKHTGL KRSGKSCRLR 60 WVNYLRPDLK RGKITPQEES IIVQLHALWG NRWSTIARSL PGRTDNEIKN YWRTHFKKGK 120 PSKNIERARA RFLKQRREMQ IQQQQQLQQL ISKVDENTNH DDGATRCGTL VEAEDRGSAV 180 VDNACAGTTA AAVTDQSSGQ HHQAAAPDLA MHDAMMDFMC PMSCGLLLHG AGGHQGGASA 240 GSCCGSTSEE YGSSEEDGAT WGSLWNLEDV VGDGGGPGAY AWGRRQRSIA RGGEGARCSY 300 KRASADSAAA VVLVDNDVGT TTAVLPLRSS SSSGSGLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-27 | 18 | 118 | 27 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824833.1 | 1e-123 | transcription factor MYB8-like isoform X2 | ||||
TrEMBL | A0A3L6PVQ3 | 1e-126 | A0A3L6PVQ3_PANMI; Transcription repressor MYB6-like | ||||
STRING | Si010822m | 1e-121 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3243 | 35 | 84 |