PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01758.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 696aa    MW: 73541.6 Da    PI: 5.6604
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01758.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS263.19.9e-813376952374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                    + L+++A+av+ g+   a+++Larl+++    g+p++R a+y++eAL   l++      +  + + ts+ +++ +l+a+k
  Zmw_sc01758.1.g00060.1.sm.mk 337 LDELVAAAKAVEIGNSIGAREILARLNQQLPLIGKPFHRSASYLMEALLLALTD-----GNNGSNRLTSPLDVALKLSAYK 412
                                   578***************************************************.....55667777777889******** PP

                          GRAS  83 lfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskee 157
                                    fs++sP+l+f+++ta qa+l++++    +++ iiDfd++ G+QW ++lq+La R+     + p++++T+++s++s++  e
  Zmw_sc01758.1.g00060.1.sm.mk 413 SFSDLSPVLQFANFTATQALLDEIACTtaSCIRIIDFDLGVGGQWSSFLQELAHRRsiggVSLPMFKLTAFVSSASHHPLE 493
                                   **********************87755559***********************9997876679****************** PP

                          GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237
                                   l+ ++++L++fA+ lg+ fef+++   +l++++  eL +  p+E +aV+l +          sl+     +L+lvk+l Pk
  Zmw_sc01758.1.g00060.1.sm.mk 494 LHLIQDNLSQFASDLGILFEFTAI---NLDAFDSAELiAPTPDEIIAVCLPVGCSVHT---PSLSM----LLQLVKQLAPK 564
                                   ***********************9...777776666615566********99766554...55555....*********** PP

                          GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrer 318
                                   +vv +++  d+++ +F ++f+++++ ++ l+dsl+a  ++++++++k+ r+l++++++++v  + ++     e++  Wr +
  Zmw_sc01758.1.g00060.1.sm.mk 565 IVVAIDHGNDRGDLPFSQHFMNCFQSCMFLLDSLDAA-GTDADAASKIGRFLIQPRVEDAVLGRRRA-----EKAIAWRTA 639
                                   **********************************999.8999*******************976665.....9999***** PP

                          GRAS 319 leeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   +++aGF p+pls+ a+ qa++ll++v+++g++ve+    l l+W++ +Lvs+SaWr
  Zmw_sc01758.1.g00060.1.sm.mk 640 FTSAGFAPMPLSNLAEVQADCLLKRVQVRGFHVEKCGMGLALYWQRGELVSISAWR 695
                                   *******************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.632310675IPR005202Transcription factor GRAS
PfamPF035143.4E-78337695IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MSAAPFTAEG NGAGSIEALL CWPANKGRGS VELTSVLDSR WSPSPPNSTA MMSSSQGGAA  60
AADSTGVPAA SENSGGADRN EEWSGGDLPP IPGSLDVGFA RDEVGWDAML SDAAAAAGQE  120
QTFLNWILAA PGDMEPPPPA AALQQQQLLG KAAGFGFPAS DALGFSQQLH LGGGASAGAL  180
ASDLSSPGAR SLTSSSGSSS KATSSFGLLP AEATLHPSPA TTKPFHDGAA IKRPLAGVPT  240
PDLILNQHQP TPAASFFMPF PSFPDHQQQP HLPPPKRHHS MPDNLFLLNN QLQPPLPQCL  300
PFPTLHTTAP FQLQPSLQPP RGAMKTTAAA AQQQQLLDEL VAAAKAVEIG NSIGAREILA  360
RLNQQLPLIG KPFHRSASYL MEALLLALTD GNNGSNRLTS PLDVALKLSA YKSFSDLSPV  420
LQFANFTATQ ALLDEIACTT ASCIRIIDFD LGVGGQWSSF LQELAHRRSI GGVSLPMFKL  480
TAFVSSASHH PLELHLIQDN LSQFASDLGI LFEFTAINLD AFDSAELIAP TPDEIIAVCL  540
PVGCSVHTPS LSMLLQLVKQ LAPKIVVAID HGNDRGDLPF SQHFMNCFQS CMFLLDSLDA  600
AGTDADAASK IGRFLIQPRV EDAVLGRRRA EKAIAWRTAF TSAGFAPMPL SNLAEVQADC  660
LLKRVQVRGF HVEKCGMGLA LYWQRGELVS ISAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-233366954375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824521.10.0scarecrow-like protein 6
TrEMBLA0A2T8IDF80.0A0A2T8IDF8_9POAL; Uncharacterized protein
STRINGGRMZM5G825321_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796