PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01756.1.g00180.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 891aa    MW: 95513.5 Da    PI: 5.8858
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01756.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.47.9e-21126181156
                                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   +++ +++t++q++eLe++F+++++p+ ++r++L++ lgL+  qVk+WFqN+R+++k
  Zmw_sc01756.1.g00180.1.sm.mk 126 KKRYHRHTQHQIQELEAFFKQCPHPDDKQRKQLSQDLGLEPLQVKFWFQNKRTQMK 181
                                   688999***********************************************999 PP
2START208.52.6e-653095341206
                                   HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG CS
                         START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke 70 
                                   ela +a++elv++a+++ep+Wv  +      e + ++e+ ++f+++ +      ++ea+r+s+vv+m++++lve l+d++ 
  Zmw_sc01756.1.g00180.1.sm.mk 309 ELAVAAMEELVRMAQLGEPLWVPTVidgvatEALSEEEYARTFPRGMGpkspeLRSEASRESVVVIMNHVNLVEMLMDVN- 388
                                   57899**************************************99988********************************. PP

                                   CT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-T CS
                         START  71 qWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppess 140
                                   qW + +     +a+tlev s+g      galqlm+ae+q++splvp R++ fvRy++q+++g+w++vdvS+d  +      
  Zmw_sc01756.1.g00180.1.sm.mk 389 QWWTLFStivsRASTLEVFSTGvagnynGALQLMSAEFQMPSPLVPtRESQFVRYCKQHTDGSWAVVDVSLDGLRGGG-GL 468
                                   88777777777******************************************************************9.8* PP

                                   TSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                         START 141 svvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                   s++R++++pSg++i++++ng+s+vtwvehv+ +++++h l+rslv+sg+a+ga++w a+lqrqce+
  Zmw_sc01756.1.g00180.1.sm.mk 469 SGIRGRRRPSGCIIREMPNGYSRVTWVEHVEADDAMVHDLYRSLVSSGQAFGARRWSAALQRQCER 534
                                   ****************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-22114167IPR009057Homeodomain-like
SuperFamilySSF466893.26E-19114183IPR009057Homeodomain-like
PROSITE profilePS5007116.73123183IPR001356Homeobox domain
SMARTSM003898.2E-19124187IPR001356Homeobox domain
CDDcd000865.27E-19125184No hitNo description
PfamPF000462.1E-18126181IPR001356Homeobox domain
PROSITE patternPS000270158181IPR017970Homeobox, conserved site
Gene3DG3DSA:1.10.10.604.4E-4168211IPR009057Homeodomain-like
PROSITE profilePS5084841.437300537IPR002913START domain
SuperFamilySSF559618.24E-32303536No hitNo description
CDDcd088751.68E-113304533No hitNo description
SMARTSM002344.2E-64309534IPR002913START domain
PfamPF018523.1E-55310534IPR002913START domain
Gene3DG3DSA:3.30.530.209.9E-6381515IPR023393START-like domain
SuperFamilySSF559615.5E-22560782No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 891 aa     Download sequence    Send to blast
MPGGMMLPGR NNMPTAAAAA MLGRNGSGLV YSPVTLGGQN LMDGQHQHQL PALHQQQYQS  60
HGQQQQQQLQ VVTSESDAHG QRQDEFMMES KSGSDNMEGG GGGGSGSVGG ELVEVEEDLS  120
LQPLRKKRYH RHTQHQIQEL EAFFKQCPHP DDKQRKQLSQ DLGLEPLQVK FWFQNKRTQM  180
KTQHERQENS HLRAENEKLR AENERYREAL ANATCPNCGG PATAVIGEMS FDEQHLRLEN  240
ARLRDEIDRI SSIAAKYVGK PAGSLPSSNI SSAATGSLYP PPLSHHLPGL DVLALPHGAA  300
GIDKPLVIEL AVAAMEELVR MAQLGEPLWV PTVIDGVATE ALSEEEYART FPRGMGPKSP  360
ELRSEASRES VVVIMNHVNL VEMLMDVNQW WTLFSTIVSR ASTLEVFSTG VAGNYNGALQ  420
LMSAEFQMPS PLVPTRESQF VRYCKQHTDG SWAVVDVSLD GLRGGGGLSG IRGRRRPSGC  480
IIREMPNGYS RVTWVEHVEA DDAMVHDLYR SLVSSGQAFG ARRWSAALQR QCERLASAMS  540
SSVPAAPAGG VAAGVVTSAE GRQSMLRLAE RMVASFCVGV TASTTHQWTT LSGSGAEDVR  600
VTTRKSVDDP GRPPGIILNA ATSFWLPVPP ARIFGFLRDD ATRSEWDILS NGGDVQEMAH  660
IANGRDQGNA VSLLRVNNVN SNQSNMLILQ ECLTDATGSY VIYAPVDVVA MNVVLNGGDP  720
DYVALLPSGF AILPDGPGAG QGGSLLTVAF QILVDSVPTA KLSLGSVATV NSLIACTVER  780
IKAAIAVDNK AGAAPPAEWP IGDQAEATRD ESGEGSRLEA VETKPKFGRG FGNAGESRTH  840
RRLALRVVAL DSEVAKGATP GNGVGSGIDS PLSSLLPSTC QALSGSSMEC Y
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972909.10.0homeobox-leucine zipper protein ROC7
SwissprotA3BPF20.0ROC7_ORYSJ; Homeobox-leucine zipper protein ROC7
TrEMBLK3YGB10.0K3YGB1_SETIT; Uncharacterized protein
STRINGSi013279m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147