PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01754.1.g00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 255aa MW: 27484.7 Da PI: 9.057 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.9 | 1.5e-30 | 18 | 71 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+eLH++Fv+ave LGG+++AtPk+il+lm+vkg++++h+kSHLQ+YR+ Zmw_sc01754.1.g00110.1.sm.mkhc 18 PRMRWTEELHRQFVKAVECLGGPDEATPKRILQLMGVKGVSISHIKSHLQMYRS 71 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.015 | 14 | 74 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-29 | 14 | 72 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-24 | 18 | 71 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.56E-16 | 18 | 73 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-8 | 19 | 70 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MRGFERKGVR QYNRSEVPRM RWTEELHRQF VKAVECLGGP DEATPKRILQ LMGVKGVSIS 60 HIKSHLQMYR SSSNNSTHQA SHQKSISATA SNSKRVFWSR EDHCVYASDH DGNAASSDKN 120 ICAMLLRNCS HSPQYQTPSL KQVFGNWEQS SGGRPPRHSS SMLTPGKAIR PSNGSSKKPA 180 EKQNGCDLTL SIGPCEDASS DADGSSTISE EVAARQGGES LGSPAAGGGL VAVKPESAPP 240 PALNLDLTIS LSWLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-16 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-16 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-16 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-16 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810426.1 | 1e-107 | probable transcription factor KAN3 | ||||
TrEMBL | A0A2S3HH64 | 1e-106 | A0A2S3HH64_9POAL; Uncharacterized protein | ||||
STRING | Si007179m | 1e-102 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5493 | 37 | 58 |