PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01754.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 299aa    MW: 32228.5 Da    PI: 7.2155
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01754.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.6e-1375119147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
  Zmw_sc01754.1.g00080.1.sm.mkhc  75 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 119
                                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.17E-1669125IPR009057Homeodomain-like
PROSITE profilePS5129414.3770124IPR017930Myb domain
TIGRFAMsTIGR015571.0E-1873122IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.8E-674115IPR009057Homeodomain-like
SMARTSM007172.7E-1074122IPR001005SANT/Myb domain
PfamPF002491.1E-1075119IPR001005SANT/Myb domain
CDDcd001676.60E-877120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MVSMSTTPMP LDAVKSAAVA GGGVDEGGGG GGKQQLMRGA AAAIAPPPMA VPAPVPAAGE  60
EVRKVRKPYT ITKSRESWTE PEHDKFLEAL QLFDRDWKKI EAYVGSKTVI QIRSHAQKYF  120
LKVEKNGTGE HLPPPRPKRK AAHPYPQKAS KTVSQAVLSQ QLHPLRDQGS VMSMDTSNVV  180
RNTNPNGAGT YCDNALVQPF SASQGVVVTN NCSSSIEGPS GNWPASEAVE QENVVPALRA  240
MPDFARVYSF LGSIFDPDTS GHLQRLKAMD PIDVETVLLL MRNLSTNLTS PDFEEHGNE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00560DAPTransfer from AT5G52660Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812931.11e-156protein REVEILLE 6-like
SwissprotQ8H0W38e-90RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A2T7DVG31e-156A0A2T7DVG3_9POAL; Uncharacterized protein
STRINGPavir.Da00204.1.p1e-155(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]