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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zmw_sc01753.1.g00240.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | ZF-HD | ||||||||
| Protein Properties | Length: 182aa MW: 18942.6 Da PI: 8.9124 | ||||||||
| Description | ZF-HD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | ZF-HD_dimer | 83.7 | 2e-26 | 45 | 96 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
+v Y eCl+NhAa+ Ggh+vDGCgEf+p+ aa+l CaACgCHR+FHRr ++
Zmw_sc01753.1.g00240.1.sm.mk 45 GVYYLECLQNHAANAGGHVVDGCGEFLPA-----PAASLSCAACGCHRSFHRRAIAS 96
689*************************9.....5789***************9765 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF04770 | 1.8E-22 | 46 | 93 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| ProDom | PD125774 | 5.0E-8 | 48 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| TIGRFAMs | TIGR01566 | 5.9E-23 | 48 | 93 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| PROSITE profile | PS51523 | 23.5 | 48 | 93 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 182 aa Download sequence Send to blast |
MEALVDVKYR LALFRHGGVA NAKNKLGHPA AATAGGRAIE SAAAGVYYLE CLQNHAANAG 60 GHVVDGCGEF LPAPAASLSC AACGCHRSFH RRAIASHSTV VPPPRLLRDG WESESDYDDG 120 RPMSPLPAQA LARPFGCSLV PALTPGAPAT CRPPVPAVHQ GPVAVASSAS VRKRFRTKFS 180 PE |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | NP_001146009.1 | 1e-30 | ZF-HD homeobox protein | ||||
| TrEMBL | B7ZYN2 | 3e-29 | B7ZYN2_MAIZE; Zinc-finger homeodomain protein 8 | ||||
| TrEMBL | K4JC44 | 3e-29 | K4JC44_MAIZE; ZF-HD-type transcription factor (Fragment) | ||||
| STRING | GRMZM2G438438_P01 | 6e-30 | (Zea mays) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP36018 | 3 | 3 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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