PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01747.1.g00250.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LSD

Protein Properties

Length: 485aa MW: 52629.7 Da PI: 11.2107

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01747.1.g00250.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	27.8	4.2e-09	155	178	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gC t+L Y rGA+++RC++C t Zmw_sc01747.1.g00250.1.am.mk 155 CNGCPTILVYNRGATNIRCPNCRT 178 **********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.4E-8	153	180	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.9E-8	155	178	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.1E-4	196	220	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MQALTVIHVS PSCARIPLTS FGRSTWYSLG ARERVDSMIG GLRGSVAPRV HMRNAVAAVV 60 GRRHPSSTIH SSANPPLILP PPRPAPPRPG VHKSQPPPAP PATVELHTSL STCSLTPRQC 120 LTAVVCASSI VSVRVYVQHS LGFLGVAREM SELVCNGCPT ILVYNRGATN IRCPNCRTLN 180 SAKSGAGASQ IGQLQCGRCP TSLAYQLGAS TVGCPRCRHV NPVRVRTRDR NERLSVSPLH 240 EFWTFPDDPR LYSMFLLLAA GCSGGPDSEQ RRGWCRFMEK MTKNECLKRS PRGPRLLTPL 300 ANTPSMTPFF FTEICAPKWL RAVCISLWRR RWLTEHRRSH RRARGNGGAR AGVVSAARRG 360 LESPRGLRTE PGSSVAGGRS RRWDSGDKAV AAALPPVPPC MDRGLVGMHG SLAIPRTAVQ 420 NAYYDDGPAA EAARRLAFRC KTLSRARAPC LHLRSCWVDD VDGVVTQPGT HEHAATPAIQ 480 FPTGP

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MQALTVIHVS PSCARIPLTS FGRSTWYSLG ARERVDSMIG GLRGSVAPRV HMRNAVAAVV  60
GRRHPSSTIH SSANPPLILP PPRPAPPRPG VHKSQPPPAP PATVELHTSL STCSLTPRQC  120
LTAVVCASSI VSVRVYVQHS LGFLGVAREM SELVCNGCPT ILVYNRGATN IRCPNCRTLN  180
SAKSGAGASQ IGQLQCGRCP TSLAYQLGAS TVGCPRCRHV NPVRVRTRDR NERLSVSPLH  240
EFWTFPDDPR LYSMFLLLAA GCSGGPDSEQ RRGWCRFMEK MTKNECLKRS PRGPRLLTPL  300
ANTPSMTPFF FTEICAPKWL RAVCISLWRR RWLTEHRRSH RRARGNGGAR AGVVSAARRG  360
LESPRGLRTE PGSSVAGGRS RRWDSGDKAV AAALPPVPPC MDRGLVGMHG SLAIPRTAVQ  420
NAYYDDGPAA EAARRLAFRC KTLSRARAPC LHLRSCWVDD VDGVVTQPGT HEHAATPAIQ  480
FPTGP

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP72843	2	2