PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01747.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 1132aa    MW: 121391 Da    PI: 7.5196
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01747.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox651.1e-20351406156
                                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   +++ +++t++q++eLe++F+++++p+ ++r++L++ lgL+  qVk+WFqN+R+++k
  Zmw_sc01747.1.g00060.1.am.mk 351 KKRYHRHTQHQIQELEAFFKQCPHPDDKQRKQLSQDLGLEPLQVKFWFQNKRTQMK 406
                                   688999***********************************************999 PP
2START205.22.7e-645347591206
                                   HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG CS
                         START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke 70 
                                   ela +a++elv++a+++ep+Wv  +      e + ++e+ ++f+++ +      ++ea+r+s+vv+m++ +lve l+d++ 
  Zmw_sc01747.1.g00060.1.am.mk 534 ELAVAAMEELVRMAQLGEPLWVPTVidgvatEALSEEEYARTFPRGMGpkspeLRSEASRESVVVIMNHINLVEMLMDVN- 613
                                   57899**************************************99988********************************. PP

                                   CT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-T CS
                         START  71 qWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppess 140
                                   qW + +     +a+tlev s+g      galqlm+ae+q++splvp R++ fvRy++q+++g+w++vdvS+d  +      
  Zmw_sc01747.1.g00060.1.am.mk 614 QWWTLFStivsRASTLEVFSTGvagnynGALQLMSAEFQMPSPLVPtRESQFVRYCKQHTDGSWAVVDVSLDGLRGGG-GL 693
                                   88777777777******************************************************************9.8* PP

                                   TSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                         START 141 svvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                   s++R++++pSg++i++++ng+s+vtwvehv+ + +++h l+rslv+sg+a+ga++w a+lqrqce+
  Zmw_sc01747.1.g00060.1.am.mk 694 SGIRGRRRPSGCIIREMPNGYSRVTWVEHVEADNAMVHDLYRSLVSSGQAFGARRWSAALQRQCER 759
                                   ****************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-22339392IPR009057Homeodomain-like
SuperFamilySSF466894.6E-19340408IPR009057Homeodomain-like
PROSITE profilePS5007116.73348408IPR001356Homeobox domain
SMARTSM003898.2E-19349412IPR001356Homeobox domain
CDDcd000867.66E-19350409No hitNo description
PfamPF000462.8E-18351406IPR001356Homeobox domain
PROSITE patternPS000270383406IPR017970Homeobox, conserved site
Gene3DG3DSA:1.10.10.606.7E-4393436IPR009057Homeodomain-like
PROSITE profilePS5084841.364525762IPR002913START domain
SuperFamilySSF559611.37E-31528761No hitNo description
CDDcd088757.40E-111529758No hitNo description
SMARTSM002341.0E-63534759IPR002913START domain
PfamPF018523.1E-54535759IPR002913START domain
Gene3DG3DSA:3.30.530.201.1E-5607741IPR023393START-like domain
SuperFamilySSF559616.05E-197851021No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1132 aa     Download sequence    Send to blast
MHQSSVDTLS AHAAPVIELG TVTSHLQATT PSVPAPPPPG TTLPVRGRGE ERQAGSKKTP  60
RPWSKLRKCH GTGRGGAREE TRSSGWLAAA IGNRSAVALA VHHPEGEVID QLRRKMHELT  120
KSDVYVRSVP WCRWMNERMS SLAKNMRASR RVWPLFVLRP PSSFPGPLPY PSPPSLSSPS  180
LTLLPSSAKI GRGLGGVAAA EGREGERVRG VGTSTEEGGC CQLGMPGGMM LPGRNNMPTA  240
AAAAMLGRNG SGLVYSPVTL GGQNLMDGQR QHQLPALHRQ QYQSHGQQQQ QQLQVVTSES  300
DAHGQRQDEF MMESKSGSDN MEGGGGGGGS GSVGGELVEV EEDLSLQPLR KKRYHRHTQH  360
QIQELEAFFK QCPHPDDKQR KQLSQDLGLE PLQVKFWFQN KRTQMKTQHE RQENSHLRAE  420
NEKLRAENER YREALANATC PNCGGPATAV IGEMSFVEQH LRLENARLHD EIDRISSIAA  480
KYVGKPAGSL PSSNISSAAT GSLYPPPLSH HLPGLDVLAL PHGAAGIDKP LVIELAVAAM  540
EELVRMAQLG EPLWVPTVID GVATEALSEE EYARTFPRGM GPKSPELRSE ASRESVVVIM  600
NHINLVEMLM DVNQWWTLFS TIVSRASTLE VFSTGVAGNY NGALQLMSAE FQMPSPLVPT  660
RESQFVRYCK QHTDGSWAVV DVSLDGLRGG GGLSGIRGRR RPSGCIIREM PNGYSRVTWV  720
EHVEADNAMV HDLYRSLVSS GQAFGARRWS AALQRQCERL ASAMSSSVPA APAGGVAAGV  780
VTSAEGRRSM LRLAERMVSS FCVGVTASTT HQWTTLSGSG AEDVRVTTRK SVDDPGRPPG  840
IILNAATSFW LPVPPARIFG FLRDDATRSE WDILSNGGDV QEMAHIANGR DQGNAVSLLR  900
VNVCPLSFPV HVFLLPNVNS NQSNMLILQE CLTDATGSYV IYAPVDVVAM NVVLNGGDPD  960
YVALLPSGFA ILPDGPGAGQ GSSLLTVAFQ ILVDSVPTAK LSLGSVATVN SLIACTVERI  1020
KAAVAVDNKA GAAPPAEWPI GDQAEASRDE SGEGSRLEAV ETKPKLKFGR GFGNAGESRT  1080
HRRLALRVVA LDSDVAKGAT PGNGVGSGID FPLSSLLPST CQALSGSSME CY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972909.10.0homeobox-leucine zipper protein ROC7
SwissprotA3BPF20.0ROC7_ORYSJ; Homeobox-leucine zipper protein ROC7
TrEMBLK3YGB10.0K3YGB1_SETIT; Uncharacterized protein
STRINGSi013279m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147