PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01745.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 298aa MW: 32241 Da PI: 5.6373 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.9 | 7.2e-16 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l d++ ++G g+W++ +++ g++R +k+c++rw +yl Zmw_sc01745.1.g00040.1.sm.mkhc 15 KGLWSPEEDQKLRDYILRYGHGCWSALPAKAGLNRNGKSCRLRWINYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.7 | 4.7e-17 | 69 | 113 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g +++eE+e +++ lG++ W++Iar+++ gRt++++k++w++yl Zmw_sc01745.1.g00040.1.sm.mkhc 69 GMFSPEEEETVMSLHAALGNK-WSRIARHLP-GRTDNEVKNYWNSYL 113 569******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.847 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.46E-29 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-14 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.02E-10 | 18 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.123 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 6.3E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 69 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.25E-12 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MGCKACEKPK PNYRKGLWSP EEDQKLRDYI LRYGHGCWSA LPAKAGLNRN GKSCRLRWIN 60 YLRPGLKHGM FSPEEEETVM SLHAALGNKW SRIARHLPGR TDNEVKNYWN SYLKKRVEGK 120 EAGPSSPAPT ATNSAADSVD DSNQSVKPGA DSGSSEPRET SSVDSSCLTD PKPAAACRPH 180 APVAPKVMFE DWLDMDMDYI IRQVAAAPGL ESAGAVGASA SPGDQHQVLS QGSVQQQNQQ 240 GDGPCGVDVS SMSLHGFGDG GAGCWEFQEQ FESLADQMPT AGVFCDLLTM TEFFAGLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-27 | 11 | 118 | 3 | 109 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953256.1 | 1e-153 | transcription factor MYB4 | ||||
TrEMBL | K3YUK1 | 1e-152 | K3YUK1_SETIT; Uncharacterized protein | ||||
STRING | Si017947m | 1e-153 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1707 | 37 | 109 |