PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01742.1.g00150.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YA

Protein Properties

Length: 191aa MW: 20986.1 Da PI: 9.3458

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01742.1.g00150.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.5	9.2e-33	85	141	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +k+rkpylheSRh+hAl+R+Rg gGrF Zmw_sc01742.1.g00150.1.am.mkhc 85 EEPVYVNAKQYNAILRRRQSRAKAESERKL-IKGRKPYLHESRHQHALKRARGAGGRF 141 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.3E-35	83	144	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.652	84	144	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.7E-27	86	141	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.4E-23	87	109	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	89	109	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.4E-23	118	141	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MTSVVESVSG DHRAEDQHQN KQKEAEPEDQ REASATSSGS QTMVGTPPPD YVATYAPPDM 60 GHAMMHPPLV GMPPAGLPLP TDAIEEPVYV NAKQYNAILR RRQSRAKAES ERKLIKGRKP 120 YLHESRHQHA LKRARGAGGR FLNSKSEDKE ENSDSSHKEK QNRVVPRNSG RPSSPTSPNG 180 ATSANHADNH E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-22	84	167	1	78	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809412.1	1e-105	nuclear transcription factor Y subunit A-7-like
TrEMBL	A0A0A9GEL2	1e-105	A0A0A9GEL2_ARUDO; Uncharacterized protein
TrEMBL	A0A2T7EJ84	1e-105	A0A2T7EJ84_9POAL; Uncharacterized protein
STRING	Si023231m	1e-104	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6555	38	53