PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01739.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LSD | ||||||||
Protein Properties | Length: 101aa MW: 10582.4 Da PI: 8.2878 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40 | 6.5e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrt+L YP GApsV+Ca+C+++ Zmw_sc01739.1.g00060.1.sm.mkhc 7 CRGCRTVLLYPQGAPSVCCAVCQAI 31 9**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 4.0E-12 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.2E-11 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.7E-6 | 43 | 57 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MHNQIVCRGC RTVLLYPQGA PSVCCAVCQA ITTVPPPGLE MAHLICGGCR TLLMYTRNGD 60 TPKTQPQNVT VVVENPMTVD EKGKLVSNVA VGVTAGSAGK N |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982348.1 | 8e-34 | protein LOL3 | ||||
Swissprot | Q6ASS2 | 3e-30 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A0A0E0KGN6 | 4e-50 | A0A0E0KGN6_ORYPU; Uncharacterized protein | ||||
STRING | OMERI03G23730.1 | 3e-37 | (Oryza meridionalis) | ||||
STRING | OMERI12G13090.1 | 4e-37 | (Oryza meridionalis) | ||||
STRING | ORUFI12G20660.2 | 5e-37 | (Oryza rufipogon) | ||||
STRING | OPUNC12G16710.1 | 4e-37 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Publications ? help Back to Top | |||
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