PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01739.1.g00060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LSD
Protein Properties Length: 101aa    MW: 10582.4 Da    PI: 8.2878
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01739.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1406.5e-13731125
                         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                    C gCrt+L YP GApsV+Ca+C+++
  Zmw_sc01739.1.g00060.1.sm.mkhc  7 CRGCRTVLLYPQGAPSVCCAVCQAI 31
                                    9**********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010534.0E-12434IPR005735Zinc finger, LSD1-type
PfamPF069434.2E-11731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.7E-64357IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MHNQIVCRGC RTVLLYPQGA PSVCCAVCQA ITTVPPPGLE MAHLICGGCR TLLMYTRNGD  60
TPKTQPQNVT VVVENPMTVD EKGKLVSNVA VGVTAGSAGK N
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982348.18e-34protein LOL3
SwissprotQ6ASS23e-30LOL3_ORYSJ; Protein LOL3
TrEMBLA0A0E0KGN64e-50A0A0E0KGN6_ORYPU; Uncharacterized protein
STRINGOMERI03G23730.13e-37(Oryza meridionalis)
STRINGOMERI12G13090.14e-37(Oryza meridionalis)
STRINGORUFI12G20660.25e-37(Oryza rufipogon)
STRINGOPUNC12G16710.14e-37(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]