PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01736.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 488aa    MW: 51734 Da    PI: 8.505
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01736.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS314.72e-961044882374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvse.lykalppsetsekn..sseela 79 
                                   ++l+++cA+ ++ gdl++a+++   l   asp +d+  Rla yf++ALa r+  ++++ ++  l +s+++        +  
  Zmw_sc01736.1.g00040.1.am.mk 104 RDLIMACADLLQRGDLQAAHHAAGVLLSAASPGADAADRLAYYFARALALRVDAKTTGrVAPGLLASSSAAAAaaRPASSG 184
                                   6799************************************************99554404444444443333323555666 PP

                          GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskee 157
                                   a+ +f+++ P+l+f+hltaNqaIl+aveg+ r+Hi+D+d+ +G+QWp+Llqa+a+R+   +gpp++RiTg g+    ++++
  Zmw_sc01736.1.g00040.1.am.mk 185 AYLAFNQIAPLLRFAHLTANQAILDAVEGAGRIHILDLDAAHGVQWPPLLQAIADRAeqgAGPPEVRITGAGA----DRDT 261
                                   7777*****************************************************88888***********....9*** PP

                          GRAS 158 leetgerLakfAeelgvpfefnvl.............vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserd 225
                                   l +tg+rL+ fA+++++pf+f++l             +++++++    +L+++p+E+laVn+v+ lh+l   + +l     
  Zmw_sc01736.1.g00040.1.am.mk 262 LLRTGSRLRAFARSIQLPFRFTPLllscasshqevagASTTTDTSLSTTLDLHPDETLAVNCVMFLHKLG-GPEEL----A 337
                                   ************************99998888876644444444456789*******************8.44444....5 PP

                          GRAS 226 evLklvkslsPkvvvvveqe...adh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
                                   ++Lk vk + P vv+++e+e          +  +r++ al++ysa+f++lea++p+ s+er  vE+e+lgrei+ +v  +g
  Zmw_sc01736.1.g00040.1.am.mk 338 AFLKWVKAMAPAVVTIAEREppgGGWdRVDEMPRRVAVALDHYSAVFEALEATVPPGSRERLLVEQEVLGREIEAAVGSSG 418
                                   6*******************654333244699**********************************************999 PP

                          GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                    +     + le+W ++ ++aGF+p pls +a++qa+lllr ++ s+gy v+e +g+ +lgW++rpL+s+S+W+
  Zmw_sc01736.1.g00040.1.am.mk 419 GR---WWRGLERWGAAARAAGFTPRPLSAFAVSQARLLLRLHYpSEGYLVQEARGACFLGWQTRPLLSISSWQ 488
                                   87...7899***************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.22177467IPR005202Transcription factor GRAS
PfamPF035146.9E-94104488IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MAVRCPVKEA APSAPDFAAR RAPLLNLPGD ARHLPHPPAH TPRQPPAAPP RLAQVKQLVL  60
VAAGKPTAML PLHHSSSSSD TDNDNRNGNT TTRGAVLEAV PSTRDLIMAC ADLLQRGDLQ  120
AAHHAAGVLL SAASPGADAA DRLAYYFARA LALRVDAKTT GRVAPGLLAS SSAAAAAARP  180
ASSGAYLAFN QIAPLLRFAH LTANQAILDA VEGAGRIHIL DLDAAHGVQW PPLLQAIADR  240
AEQGAGPPEV RITGAGADRD TLLRTGSRLR AFARSIQLPF RFTPLLLSCA SSHQEVAGAS  300
TTTDTSLSTT LDLHPDETLA VNCVMFLHKL GGPEELAAFL KWVKAMAPAV VTIAEREPPG  360
GGWDRVDEMP RRVAVALDHY SAVFEALEAT VPPGSRERLL VEQEVLGREI EAAVGSSGGR  420
WWRGLERWGA AARAAGFTPR PLSAFAVSQA RLLLRLHYPS EGYLVQEARG ACFLGWQTRP  480
LLSISSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4711048726378Protein SCARECROW
5b3h_A1e-4711048725377Protein SCARECROW
5b3h_D1e-4711048725377Protein SCARECROW
5hyz_A1e-4713148831375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810768.10.0protein MONOCULM 1-like
RefseqXP_025810769.10.0protein MONOCULM 1-like
SwissprotQ84MM91e-177MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A3L6PE740.0A0A3L6PE74_PANMI; Protein MONOCULM 1-like
STRINGSb10g023950.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]