PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01733.1.g00140.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 321aa    MW: 34877.9 Da    PI: 4.6351
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01733.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33.1e-19103156356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k++++++eq+++Le+ Fe ++++  e++++LA+ lgL+ rqV vWFqNrRa++k
  Zmw_sc01733.1.g00140.1.sm.mk 103 KKRRLSTEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 156
                                   45689************************************************9 PP
2HD-ZIP_I/II133.29.6e-43102194193
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   ekkrrls+eqv++LE+sFe+e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy aL+++ydal++++++L+
  Zmw_sc01733.1.g00140.1.sm.mk 102 EKKRRLSTEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYVALRQSYDALRADHDALR 182
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreelke 93 
                                   +++++L +e+ke
  Zmw_sc01733.1.g00140.1.sm.mk 183 RDKDALLAEIKE 194
                                   *******99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.21E-1996160IPR009057Homeodomain-like
PROSITE profilePS5007117.62198158IPR001356Homeobox domain
SMARTSM003892.0E-18101162IPR001356Homeobox domain
PfamPF000462.0E-16103156IPR001356Homeobox domain
CDDcd000861.25E-17103159No hitNo description
Gene3DG3DSA:1.10.10.607.1E-20105164IPR009057Homeodomain-like
PRINTSPR000311.2E-5129138IPR000047Helix-turn-helix motif
PROSITE patternPS000270133156IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5138154IPR000047Helix-turn-helix motif
PfamPF021838.3E-17158199IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MVTGLGGHNY KKDGRDVAKK QFIMKRPSGS RSGGGDGLVS MVQSGKIFLV ISPVFFLSVA  60
TRRCGLRERD VGFACTDDGF VDVAVEEEAD EDTEMPVGGG GEKKRRLSTE QVRALERSFE  120
TENKLEPERK ARLARDLGLQ PRQVAVWFQN RRARWKTKQL ERDYVALRQS YDALRADHDA  180
LRRDKDALLA EIKELNAKLG DEDAAASFSS VKEEPVASDA DPPPAATAAQ GSSESDSSGV  240
VNDTETASEK KPAPTNAAEA EAVVPGAAAL EGEVLFHAQL LKVEGDEAAF LDDDAAACGG  300
FFADLQPPSL PWWTEPMEHW A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133ERKARLA
2150158RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650851.11e-111homeobox-leucine zipper protein HOX20
SwissprotA2YWC01e-112HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
SwissprotQ6Z2481e-112HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
TrEMBLA0A1E5UJN71e-117A0A1E5UJN7_9POAL; Homeobox-leucine zipper protein HOX20
STRINGOBART08G18330.11e-115(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]